32 terms with labels ending in biome, but not subclasses of 'biome', ENVO:00000428

[turbomam]

It's easy to see for yourself with the Ontology Access Kit

runoak --input sqlite:obo:envo search 'l/biome$' .not .predicates=i .descendants biome | grep -v obsolete

ENVO:01000174 ! forest biome
ENVO:01000177 ! grassland biome
ENVO:01000179 ! desert biome
ENVO:01000182 ! temperate desert biome
ENVO:01000183 ! tropical desert biome
ENVO:01000184 ! subtropical desert biome
ENVO:01000185 ! montane desert biome
ENVO:01000186 ! polar desert biome
ENVO:01000191 ! subtropical grassland biome
ENVO:01000192 ! tropical grassland biome
ENVO:01000193 ! temperate grassland biome
ENVO:01000194 ! montane grassland biome
ENVO:01000195 ! flooded grassland biome
ENVO:01000196 ! coniferous forest biome
ENVO:01000197 ! broadleaf forest biome
ENVO:01000198 ! mixed forest biome
ENVO:01000199 ! mediterranean forest biome
ENVO:01000200 ! tropical broadleaf forest biome
ENVO:01000201 ! subtropical broadleaf forest biome
ENVO:01000202 ! temperate broadleaf forest biome
ENVO:01000209 ! subtropical coniferous forest biome
ENVO:01000210 ! tropical coniferous forest biome
ENVO:01000211 ! temperate coniferous forest biome
ENVO:01000212 ! temperate mixed forest biome
ENVO:01000224 ! mediterranean grassland biome
ENVO:01000225 ! subtropical dry broadleaf forest biome
ENVO:01000226 ! subtropical moist broadleaf forest biome
ENVO:01000227 ! tropical dry broadleaf forest biome
ENVO:01000228 ! tropical moist broadleaf forest biome
ENVO:01000245 ! cropland biome
ENVO:01000250 ! subpolar coniferous forest biome
ENVO:01001798 ! tropical mixed forest biome

[turbomam]

The following query against ubergraph (which is supposed to materialize transitive relationships) doesn't pick those up as subclasses of biome either

PREFIX  rdf:  <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX  rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix envo: <http://purl.obolibrary.org/obo/ENVO_>
SELECT  ?s (str(?l) as ?label)
WHERE
{
  ?s  rdfs:isDefinedBy  <http://purl.obolibrary.org/obo/envo.owl> ;
      rdfs:subClassOf   <http://purl.obolibrary.org/obo/ENVO_00000428> ;
      rdfs:label ?l
}
order by ?label

Same thing for an analogous local query of http://purl.obolibrary.org/obo/envo/releases/2021-05-14/envo-base.owl via Fuseki or robot.

I have this vague sense that I have seen 'forest biome' in 'biome's hierarchy in Protégé. Maybe that was an older version of the ontology? I just haven't been able to replicate, even with Hermit reasoning enabled.

[pbuttigieg]

Biome will be populated by inference, thus the farming out of "[ecosystem] biome" under their respective ecosystems. Have to add successional processes to build the equivalence axioms.

[pbuttigieg]

@turbomam could you run this test again ?