Merge pull request #28309 from JuliaLang/kc/bump_pkg

Bump Pkg

Author: KristofferC

stdlib/Base64/Project.toml

@@ -1,2 +1,9 @@
 name = "Base64"
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[targets]
+test = ["Test", "Random"]

stdlib/CRC32c/Project.toml

@@ -1,2 +1,9 @@
 name = "CRC32c"
 uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[targets]
+test = ["Test", "Random"]

stdlib/Dates/Project.toml

@@ -3,3 +3,10 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
 [deps]
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
+
+[targets]
+test = ["Test", "InteractiveUtils"]

stdlib/DelimitedFiles/Project.toml

@@ -3,3 +3,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 
 [deps]
 Mmap = "a63ad114-7e13-5084-954f-fe012c677804"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[targets]
+test = ["Test", "Random"]

stdlib/Distributed/Project.toml

@@ -6,3 +6,9 @@ LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Sockets = "6462fe0b-24de-5631-8697-dd941f90decc"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

stdlib/FileWatching/Project.toml

@@ -1,2 +1,8 @@
 name = "FileWatching"
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

stdlib/Future/Project.toml

@@ -3,3 +3,10 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
 [deps]
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+
+[targets]
+test = ["Test", "SparseArrays"]

stdlib/InteractiveUtils/Project.toml

@@ -4,3 +4,10 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 [deps]
 Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[targets]
+test = ["Test", "Random"]

stdlib/LibGit2/Project.toml

@@ -1,2 +1,11 @@
 name = "LibGit2"
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
+Sockets = "6462fe0b-24de-5631-8697-dd941f90decc"
+
+[targets]
+test = ["Test", "Random", "Serialization", "Sockets"]

stdlib/Libdl/Project.toml

@@ -1,2 +1,8 @@
 name = "Libdl"
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

stdlib/LinearAlgebra/Project.toml

@@ -3,3 +3,11 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [deps]
 Libdl = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+
+[targets]
+test = ["Test", "Random", "SparseArrays"]

stdlib/Logging/Project.toml

@@ -1,2 +1,8 @@
 name = "Logging"
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

stdlib/Markdown/Project.toml

@@ -3,3 +3,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [deps]
 Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

stdlib/Mmap/Project.toml

@@ -1,2 +1,9 @@
 name = "Mmap"
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[targets]
+test = ["Test", "Random"]

stdlib/OldPkg/Project.toml

@@ -3,3 +3,10 @@ uuid = "fe1c5a76-5840-53d2-82f9-288dd83ce2ce"
 
 [deps]
 LibGit2 = "76f85450-5226-5b5a-8eaa-529ad045b433"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[targets]
+test = ["Test", "Random"]

stdlib/Pkg/Project.toml

@@ -13,3 +13,9 @@ REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 SHA = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 UUIDs = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

stdlib/Pkg/docs/make.jl

@@ -1,6 +1,8 @@
 # This file is a part of Julia. License is MIT: https://julialang.org/license
 
-using Documenter, Pkg
+Base.ACTIVE_PROJECT[] = joinpath(@__DIR__, "..")
+using Documenter
+using Pkg
 
 makedocs(
     modules = [Pkg],

stdlib/Pkg/docs/src/index.md

@@ -193,6 +193,9 @@ Since we haven't created our own project yet, we are in the default project, loc
 
 To return to the `julia>` prompt, either press backspace when the input line is empty or press Ctrl+C.
 Help is available by calling `pkg> help`.
+If you are in an environment that does not have access to a REPL you can still use the REPL mode commands using
+the string macro `pkg` available after `using Pkg`. The command `pkg"cmd"` would be equivalent to executing `cmd`
+in the REPL mode.
 
 The documentation here describes using Pkg from the REPL mode. Documentation of using
 the Pkg API (by calling `Pkg.` functions) is in progress of being written.
@@ -356,6 +359,7 @@ Note the info message saying that it is using the existing path. This means that
 an already developed package.
 
 If `dev` is used on a local path, that path to that package is recorded and used when loading that package.
+The path will be recorded relative to the project file, unless it is given as an absolute path.
 
 To stop tracking a path and use the registered version again, use `free`
 
@@ -689,13 +693,18 @@ Testing...
 
 #### Test-specific dependencies
 
-Sometimes one might want to use some packages only at testing time but not enforce a dependency on them when the package is used.
-This is possible by adding dependencies to a "test target" to the Project file. Here we add the `Test` standard library as a
-test-only dependency by adding the following to the Project file:
+Sometimes one might want to use some packages only at testing time but not
+enforce a dependency on them when the package is used. This is possible by
+adding `[extra]` dependencies and adding a a "test target" to the Project file.
+Here we add the `Test` standard library as a test-only dependency by adding the
+following to the Project file:
 
 ```
-[targets.test.deps]
+[extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]
 ```
 
 We can now use `Test` in the test script and we can see that it gets installed on testing:
@@ -826,3 +835,30 @@ Simply clone their project using e.g. `git clone`, `cd` to the project directory
 
 If the project contains a manifest, this will install the packages in the same state that is given by that manifest.
 Otherwise, it will resolve the latest versions of the dependencies compatible with the project.
+
+## References
+
+This section describes the "API mode" of interacting with Pkg.jl which is recommended for non-interactive usage,
+in i.e. scripts. In the REPL mode packages (with associated version, UUID, URL etc) are parsed from strings,
+for example, `"Package#master"`,`"[email protected]"`, `"www.mypkg.com/MyPkg#my/feature"`.
+It is possible to use strings as arguments for simple commands in the API mode (like `Pkg.add(["PackageA", "PackageB"])`,
+more complicated commands, that e.g. specify URLs or version range, uses a more structured format over strings.
+This is done by creating an instance of a [`PackageSpec`](@ref) which are passed in to functions.
+
+```@docs
+PackageSpec
+PackageMode
+UpgradeLevel
+Pkg.add
+Pkg.develop
+Pkg.activate
+Pkg.rm
+Pkg.update
+Pkg.test
+Pkg.build
+Pkg.pin
+Pkg.free
+Pkg.instantiate
+Pkg.resolve
+Pkg.setprotocol!
+```

stdlib/Pkg/src/API.jl

@@ -17,26 +17,33 @@ preview_info() = printstyled("───── Preview mode ─────\n"; c
 
 include("generate.jl")
 
-parse_package(pkg) = Pkg.REPLMode.parse_package(pkg; add_or_develop=true)
+function check_package_name(x::String)
+    if !(occursin(Pkg.REPLMode.name_re, x))
+         cmderror("$x is not a valid packagename")
+    end
+    return PackageSpec(x)
+end
 
 add_or_develop(pkg::Union{String, PackageSpec}; kwargs...) = add_or_develop([pkg]; kwargs...)
-add_or_develop(pkgs::Vector{String}; kwargs...)            = add_or_develop([parse_package(pkg) for pkg in pkgs]; kwargs...)
+add_or_develop(pkgs::Vector{String}; kwargs...)            = add_or_develop([check_package_name(pkg) for pkg in pkgs]; kwargs...)
 add_or_develop(pkgs::Vector{PackageSpec}; kwargs...)       = add_or_develop(Context(), pkgs; kwargs...)
 
-function add_or_develop(ctx::Context, pkgs::Vector{PackageSpec}; mode::Symbol, kwargs...)
+function add_or_develop(ctx::Context, pkgs::Vector{PackageSpec}; mode::Symbol, devdir::Union{String,Nothing}=nothing, kwargs...)
     Context!(ctx; kwargs...)
 
+    # All developed packages should go through handle_repos_develop so just give them an empty repo
+    for pkg in pkgs
+        mode == :develop && pkg.repo == nothing && (pkg.repo = Types.GitRepo())
+    end
+
     # if julia is passed as a package the solver gets tricked;
     # this catches the error early on
     any(pkg->(pkg.name == "julia"), pkgs) &&
         cmderror("Trying to $mode julia as a package")
 
     ctx.preview && preview_info()
-    if !UPDATED_REGISTRY_THIS_SESSION[]
-        update_registry(ctx)
-    end
     if mode == :develop
-        new_git = handle_repos_develop!(ctx, pkgs)
+        new_git = handle_repos_develop!(ctx, pkgs, something(devdir, Pkg.devdir()))
     else
         new_git = handle_repos_add!(ctx, pkgs; upgrade_or_add=true)
     end
@@ -55,12 +62,10 @@ end
 
 add(args...; kwargs...) = add_or_develop(args...; mode = :add, kwargs...)
 develop(args...; kwargs...) = add_or_develop(args...; mode = :develop, kwargs...)
-@deprecate checkout develop
-
 
-rm(pkg::Union{String, PackageSpec}; kwargs...)               = rm([pkg]; kwargs...)
-rm(pkgs::Vector{String}; kwargs...)      = rm([PackageSpec(pkg) for pkg in pkgs]; kwargs...)
-rm(pkgs::Vector{PackageSpec}; kwargs...) = rm(Context(), pkgs; kwargs...)
+rm(pkg::Union{String, PackageSpec}; kwargs...) = rm([pkg]; kwargs...)
+rm(pkgs::Vector{String}; kwargs...)            = rm([PackageSpec(pkg) for pkg in pkgs]; kwargs...)
+rm(pkgs::Vector{PackageSpec}; kwargs...)       = rm(Context(), pkgs; kwargs...)
 
 function rm(ctx::Context, pkgs::Vector{PackageSpec}; kwargs...)
     Context!(ctx; kwargs...)
@@ -96,7 +101,7 @@ function update_registry(ctx)
                     try
                         GitTools.fetch(repo; refspecs=["+refs/heads/$branch:refs/remotes/origin/$branch"])
                     catch e
-                        e isa LibGit2.GitError || rethrow(e)
+                        e isa CommandError || rethrow(e)
                         push!(errors, (reg, "failed to fetch from repo"))
                         return
                     end
@@ -280,22 +285,20 @@ function gc(ctx::Context=Context(); kwargs...)
     for (manifestfile, date) in manifest_date
         !isfile(manifestfile) && continue
         println("        `$manifestfile`")
-        infos = try
+        manifest = try
             read_manifest(manifestfile)
         catch e
             @warn "Reading manifest file at $manifestfile failed with error" exception = e
             nothing
         end
-        infos == nothing && continue
+        manifest == nothing && continue
         new_usage[manifestfile] = [Dict("time" => date)]
-        for entry in infos
-            entry isa Pair || continue
-            name, _stanzas = entry
-            @assert length(_stanzas) == 1
-            stanzas = _stanzas[1]
-            if stanzas isa Dict && haskey(stanzas, "uuid") && haskey(stanzas, "git-tree-sha1")
-                push!(paths_to_keep,
-                      Operations.find_installed(name, UUID(stanzas["uuid"]), SHA1(stanzas["git-tree-sha1"])))
+        for (name, infos) in manifest
+            for info in infos
+                if haskey(info, "uuid") && haskey(info, "git-tree-sha1")
+                    push!(paths_to_keep,
+                          Operations.find_installed(name, UUID(info["uuid"]), SHA1(info["git-tree-sha1"])))
+                end
             end
         end
     end
@@ -381,11 +384,11 @@ function _get_deps!(ctx::Context, pkgs::Vector{PackageSpec}, uuids::Vector{UUID}
     return
 end
 
+
 build(pkgs...) = build([PackageSpec(pkg) for pkg in pkgs])
 build(pkg::Array{Union{}, 1}) = build(PackageSpec[])
 build(pkg::PackageSpec) = build([pkg])
 build(pkgs::Vector{PackageSpec}) = build(Context(), pkgs)
-
 function build(ctx::Context, pkgs::Vector{PackageSpec}; kwargs...)
     Context!(ctx; kwargs...)
 
@@ -426,7 +429,7 @@ function clone(url::String, name::String = "")
     if !isempty(name)
         ctx.old_pkg2_clone_name = name
     end
-    develop(ctx, [parse_package(url)])
+    develop(ctx, [Pkg.REPLMode.parse_package(url; add_or_develop=true)])
 end
 
 function dir(pkg::String, paths::String...)
@@ -543,6 +546,13 @@ function instantiate(ctx::Context; manifest::Union{Bool, Nothing}=nothing, kwarg
     Operations.build_versions(ctx, union(new_apply, new_git))
 end
 
+
+status(mode=PKGMODE_PROJECT) = status(Context(), mode)
+function status(ctx::Context, mode=PKGMODE_PROJECT)
+    Pkg.Display.status(ctx, mode)
+    return
+end
+
 function activate(path::Union{String,Nothing}=nothing)
     Base.ACTIVE_PROJECT[] = Base.load_path_expand(path)
 end

stdlib/Pkg/src/Display.jl

@@ -143,6 +143,8 @@ function print_diff(io::IO, ctx::Context, diff::Vector{DiffEntry}, status=false)
         pkgid = Base.PkgId(x.uuid, x.name)
         package_downloaded = pkgid in keys(Base.loaded_modules) ||
                              Base.locate_package(pkgid) !== nothing
+        # Package download detection doesnt work properly when runn running targets
+        ctx.currently_running_target && (package_downloaded = true)
         if x.old != nothing && x.new != nothing
             if x.old ≈ x.new
                 verb = ' '