Merge pull request #1 from fda-tome/fdat/mpi-test-implementation

Fdat/mpi test implementation

Author: fda-tome

Diff for: .buildkite/pipeline.yml

@@ -2,15 +2,14 @@
   if: build.message !~ /\[skip tests\]/
   agents:
     queue: "juliaecosystem"
-    sandbox.jl: "true"
+    sandbox_capable: "true"
     os: linux
-    arch: x86_64
   command: "julia --project -e 'using Pkg; Pkg.develop(;path=\"lib/TimespanLogging\")'"
 .bench: &bench
   if: build.message =~ /\[run benchmarks\]/
   agents:
     queue: "juliaecosystem"
-    sandbox.jl: "true"
+    sandbox_capable: "true"
     os: linux
     arch: x86_64
     num_cpus: 16
@@ -35,12 +34,22 @@ steps:
           julia_args: "--threads=1"
       - JuliaCI/julia-coverage#v1:
           codecov: true
+  - label: Julia 1.9
+    timeout_in_minutes: 60
+    <<: *test
+    plugins:
+      - JuliaCI/julia#v1:
+          version: "1.9"
+      - JuliaCI/julia-test#v1:
+          julia_args: "--threads=1"
+      - JuliaCI/julia-coverage#v1:
+          codecov: true
   - label: Julia nightly
     timeout_in_minutes: 60
     <<: *test
     plugins:
       - JuliaCI/julia#v1:
-          version: "1.9-nightly"
+          version: "1.10-nightly"
       - JuliaCI/julia-test#v1:
           julia_args: "--threads=1"
       - JuliaCI/julia-coverage#v1:
@@ -102,7 +111,7 @@ steps:
       JULIA_NUM_THREADS: "4"
     agents:
       queue: "juliaecosystem"
-      sandbox.jl: "true"
+      sandbox_capable: "true"
       os: linux
       arch: x86_64
     command: "git clone https://github.com/JuliaParallel/DTables.jl.git ; julia -t4 -e 'using Pkg; Pkg.activate(\"DTables.jl\"); Pkg.develop(;path=\".\"); Pkg.instantiate(); Pkg.test()'"

Diff for: .github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"

Diff for: .github/workflows/Documentation.yml

@@ -11,7 +11,7 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@latest
         with:
           version: '1.7'

Diff for: Manifest.toml

@@ -1,10 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.7.2"
+julia_version = "1.7.3"
 manifest_format = "2.0"
-
-[[deps.ArgTools]]
-uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
+project_hash = "5ba2b95d6ceff51529a7cbdb1ff8926d49138671"
 
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@@ -14,15 +12,15 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "80ca332f6dcb2508adba68f22f551adb2d00a624"
+git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.15.3"
+version = "1.16.0"
 
 [[deps.ChangesOfVariables]]
-deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
-git-tree-sha1 = "38f7a08f19d8810338d4f5085211c7dfa5d5bdd8"
+deps = ["LinearAlgebra", "Test"]
+git-tree-sha1 = "f84967c4497e0e1955f9a582c232b02847c5f589"
 uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
-version = "0.1.4"
+version = "0.1.7"
 
 [[deps.ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -32,30 +30,30 @@ version = "0.11.4"
 
 [[deps.Colors]]
 deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
-git-tree-sha1 = "417b0ed7b8b838aa6ca0a87aadf1bb9eb111ce40"
+git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a"
 uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
-version = "0.12.8"
+version = "0.12.10"
 
 [[deps.Compat]]
-deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "9be8be1d8a6f44b96482c8af52238ea7987da3e3"
+deps = ["Dates", "LinearAlgebra", "UUIDs"]
+git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.45.0"
+version = "4.6.1"
 
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
 
 [[deps.ContextVariablesX]]
 deps = ["Compat", "Logging", "UUIDs"]
-git-tree-sha1 = "8ccaa8c655bc1b83d2da4d569c9b28254ababd6e"
+git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc"
 uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5"
-version = "0.1.2"
+version = "0.1.3"
 
 [[deps.DataAPI]]
-git-tree-sha1 = "fb5f5316dd3fd4c5e7c30a24d50643b73e37cd40"
+git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.10.0"
+version = "1.15.0"
 
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@@ -67,23 +65,15 @@ version = "0.18.13"
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
-[[deps.DelimitedFiles]]
-deps = ["Mmap"]
-uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
-
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
-git-tree-sha1 = "5158c2b41018c5f7eb1470d558127ac274eca0c9"
+git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
 uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-version = "0.9.1"
-
-[[deps.Downloads]]
-deps = ["ArgTools", "LibCURL", "NetworkOptions"]
-uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
+version = "0.9.3"
 
 [[deps.FixedPointNumbers]]
 deps = ["Statistics"]
@@ -97,31 +87,19 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[deps.InverseFunctions]]
 deps = ["Test"]
-git-tree-sha1 = "b3364212fb5d870f724876ffcd34dd8ec6d98918"
+git-tree-sha1 = "6667aadd1cdee2c6cd068128b3d226ebc4fb0c67"
 uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
-version = "0.1.7"
+version = "0.1.9"
 
 [[deps.IrrationalConstants]]
-git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151"
+git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
-version = "0.1.1"
-
-[[deps.LibCURL]]
-deps = ["LibCURL_jll", "MozillaCACerts_jll"]
-uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-
-[[deps.LibCURL_jll]]
-deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
-uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
+version = "0.2.2"
 
 [[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
-[[deps.LibSSH2_jll]]
-deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
-uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
@@ -131,27 +109,23 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LogExpFunctions]]
 deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "361c2b088575b07946508f135ac556751240091c"
+git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.17"
+version = "0.3.24"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[deps.MacroTools]]
 deps = ["Markdown", "Random"]
-git-tree-sha1 = "3d3e902b31198a27340d0bf00d6ac452866021cf"
+git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.9"
+version = "0.5.10"
 
 [[deps.Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
-[[deps.MbedTLS_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
-
 [[deps.MemPool]]
 deps = ["DataStructures", "Distributed", "Mmap", "Random", "Serialization", "Sockets"]
 git-tree-sha1 = "303f55cede4947d0acb325ac0bd7595fbcad6b99"
@@ -160,16 +134,13 @@ version = "0.4.2"
 
 [[deps.Missings]]
 deps = ["DataAPI"]
-git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f"
+git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272"
 uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
-version = "1.0.2"
+version = "1.1.0"
 
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
-[[deps.MozillaCACerts_jll]]
-uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 
@@ -178,13 +149,9 @@ deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
 
 [[deps.OrderedCollections]]
-git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
+git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.4.1"
-
-[[deps.Pkg]]
-deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
-uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+version = "1.6.0"
 
 [[deps.Printf]]
 deps = ["Unicode"]
@@ -194,10 +161,6 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 deps = ["Printf"]
 uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
 
-[[deps.REPL]]
-deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
-uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
-
 [[deps.Random]]
 deps = ["SHA", "Serialization"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
@@ -228,9 +191,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "b3363d7460f7d098ca0912c69b082f75625d7508"
+git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.0.1"
+version = "1.1.0"
 
 [[deps.SparseArrays]]
 deps = ["LinearAlgebra", "Random"]
@@ -242,23 +205,15 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
 [[deps.StatsAPI]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "2c11d7290036fe7aac9038ff312d3b3a2a5bf89e"
+git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7"
 uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.4.0"
+version = "1.6.0"
 
 [[deps.StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "0005d75f43ff23688914536c5e9d5ac94f8077f7"
+git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.33.20"
-
-[[deps.TOML]]
-deps = ["Dates"]
-uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
-
-[[deps.Tar]]
-deps = ["ArgTools", "SHA"]
-uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
+version = "0.33.21"
 
 [[deps.Test]]
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
@@ -277,18 +232,6 @@ uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 [[deps.Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
-[[deps.Zlib_jll]]
-deps = ["Libdl"]
-uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
-
-[[deps.nghttp2_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-
-[[deps.p7zip_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"

Diff for: Project.toml

@@ -1,10 +1,11 @@
 name = "Dagger"
 uuid = "d58978e5-989f-55fb-8d15-ea34adc7bf54"
-version = "0.16.3"
+version = "0.17.0"
 
 [deps]
 Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
 ContextVariablesX = "6add18c4-b38d-439d-96f6-d6bc489c04c5"
+DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
@@ -23,6 +24,7 @@ UUIDs = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 [compat]
 Colors = "0.10, 0.11, 0.12"
 ContextVariablesX = "0.1"
+DataStructures = "0.18"
 MacroTools = "0.5"
 MemPool = "0.4"
 Requires = "1"

Diff for: README.md

@@ -1,6 +1,8 @@
-# Dagger.jl
+<img src="docs/logo.jpg" alt="Dagger.jl">
 
-*A framework for out-of-core and parallel computing*
+-----
+
+<h2 align="center">A framework for out-of-core and parallel computing</h2>
 
 | **Documentation**                       | **Build Status**                        |
 |:---------------------------------------:|:---------------------------------------:|
@@ -13,7 +15,7 @@
 
 At the core of Dagger.jl is a scheduler heavily inspired by [Dask](https://docs.dask.org/en/latest/). It can run computations represented as [directed-acyclic-graphs](https://en.wikipedia.org/wiki/Directed_acyclic_graph) (DAGs) efficiently on many Julia worker processes and threads, as well as GPUs via [DaggerGPU.jl](https://github.com/JuliaGPU/DaggerGPU.jl).
 
-***DTable** has been moved out of this repository. You can find it in a standalone package format [here](https://github.com/JuliaParallel/DTables.jl).*
+*The **DTable** has been moved out of this repository. You can now find it [here](https://github.com/JuliaParallel/DTables.jl).*
 
 ## Installation