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Update history and content of "MITgcm/verification_other"
=================================================================
checkpoint69d (2025/03/01) synchronised with main MITgcm code.
- remove atm_gray experiment (got moved to verification, MITgcm PR 883) and
make a new test-exp (atm_gray_ll) from Lat-Lon atm_gray set-up. Also remove
simplified Cubed-Sphere set-up code_cs & inp_cs from former atm_gray dir.
- remove local version of rotate_uv2en.F (from global_oce_*/code) since
refererence version (from model/src) works as well.
- update local version of CPP header files CPP_OPTIONS.h, GAD_OPTIONS.h,
MOM_COMMON_OPTIONS.h, ECCO_OPTIONS.h and CPP_EEOPTIONS.h (as done in MITgcm
PR 868, PR 795 and PR 890).
- add README.md + one in atm_gray_ll.
checkpoint69c (2024/12/06) synchronised with main MITgcm code.
checkpoint69b (2024/10/31) synchronised with main MITgcm code.
checkpoint69a (2024/09/09) synchronised with main MITgcm code.
checkpoint68z (2024/07/27) synchronised with main MITgcm code.
checkpoint68y (2024/06/05) synchronised with main MITgcm code.
checkpoint68x (2024/04/30) synchronised with main MITgcm code.
- add PJ Tuckman idealized, cs32, coupled Ocean - Atmosphere set-up
using simplified gray atmospheric physics with swamp over continent
checkpoint68w (2024/03/05) synchronised with main MITgcm code.
- post PR #796: update all data.grdchk by setting "grdchkvarname" instead
of "grdchkvarindex".
- update seaice parameters for global_oce_llc90.ecmwf secondary test.
- in exp. "global_ocean.gm_k3d", add new secondary test for GEOMETRIC
parameterization of Kappa GM, initially added by @mjlosch in PR #674.
- add David Ferreira idealized, cs24, coupled Ocean - Atmosphere set-up
using AIM simplified atmospheric physics with interactive CO2 feedback.
checkpoint68v (2024/02/03) synchronised with main MITgcm code.
- post PR #800 (pkg/shelfice kTopC): update customized source code for
experiment "shelfice_remeshing"
checkpoint68u (2023/12/10) synchronised with main MITgcm code.
checkpoint68t (2023/10/28) synchronised with main MITgcm code.
- post PR #769: after fixing bug in GM_ExtraDiag setting, update ref. output
of the 2 exp. that use Bates-K3d (previous wrong results as ExtraDiag=F).
- post PR #768: change #include "ctrl_dummy.h" to "CTRL_DUMMY.h" in 1 file.
- post PR #767: change #include "ctrl.h" to "CTRL.h" in 1 customized src file.
checkpoint68s (2023/09/11) synchronised with main MITgcm code.
- update seaice and AD related CPP-headers files in exp. offline_cheapaml,
global_oce_cs32 & global_oce_llc90 (all in code/ dir).
checkpoint68r (2023/08/02) synchronised with main MITgcm code.
- post PR #749: remove parameter "nobcs" from SIZE.h (now in CTRL_OBCS.h).
checkpoint68q (2023/06/29) synchronised with main MITgcm code.
- post PR #714: update both Fwd & Ad ref output for cs32 & llc90 tests that
uses pkg/ggl90 (i.e., all except the 2 AD tests llc90 primary + core2 ).
checkpoint68p (2023/05/07) synchronised with main MITgcm code.
checkpoint68o (2023/03/13) synchronised with main MITgcm code.
- post PR #689: update and clean-up exp. global_oce_cs32 & global_oce_llc90
local CPP header files ; also, for llc90, replace few parameter files from
input_ad & input_ad.ecco_v4 with sym-link from prepare_run.
- add comments in "data.ecco" from (llc90) input.ecco_v4/ on how to try to
use S/R cost_gencost_bpv4.
checkpoint68n (2023/02/08) synchronised with main MITgcm code.
checkpoint68m (2022/12/05) synchronised with main MITgcm code.
- post PR #650: update local "tamc.h" as done in verification/*/code_ad/
checkpoint68l (2022/10/26) synchronised with main MITgcm code.
checkpoint68k (2022/08/17) synchronised with main MITgcm code.
- remove both parameters "useSmoothCorrel2D/3D" from data.ctrl and options
ALLOW_SMOOTH_CORREL2D/3D from CTRL_OPTIONS.h in experiments: glogal_oce_cs32
and global_oce_llc90 (not doing anything outside ECCO_CTRL_DEPRECATED code).
- post PR #637: define new CPP options GM_INPUT_K3D_GM & GM_INPUT_K3D_REDI
(in GMREDI_OPTIONS.h) to use ALLOW_KAPGM_CONTROL & ALLOW_KAPREDI_CONTROL
checkpoint68j (2022/06/28) synchronised with main MITgcm code.
- post PR #611: due to single prec tapes (isbyte=4), switching to local tapes
in gad_advection.F affects AD-grad of ecco_v4 exp. (6 matching digits left)
and AD monitor (in all 4 llc90 + 2 cs32 exp); update all 4 llc90 output_adm
reference output.
checkpoint68i (2022/04/27) synchronised with main MITgcm code.
- post PR #587 & #609: cleaning/updating some parameter files
checkpoint68h (2022/03/22) synchronised with main MITgcm code.
- post PR #560 (extra_diags): update cs32 (primary) output_adm.txt
checkpoint68g (2022/02/19) synchronised with main MITgcm code.
- following main code PR #576, rename GM_K3D to GM_BATES(_K3D).
checkpoint68f (2022/01/14) synchronised with main MITgcm code.
checkpoint68e (2021/12/10) synchronised with main MITgcm code.
checkpoint68d (2021/11/05) synchronised with main MITgcm code.
checkpoint68c (2021/10/02) synchronised with main MITgcm code.
checkpoint68b (2021/08/24) synchronised with main MITgcm code.
- post PR #507: Turn on "sterGloH" output in global_oce_cs32 "data.ecco".
- post PR #502 (improve_remove_mean): update 3 llc90 output_adm (all except
ecco_v4) since FWD results & FWD Grad change at machine truncation level.
checkpoint68a (2021/07/16) synchronised with main MITgcm code.
- define ALLOW_DIFFKR_CONTROL in experiment global_oce_cs32 & llc90:
with generic-control and ALLOW_3D_DIFFKR, diffKr was available as a control
without ALLOW_DIFFKR_CONTROL defined (not well documented); this was dropped
in https://github.com/MITgcm/MITgcm/pull/447 (ctrl_map_ini_genarr.F) and is
put back here ; results unchanged (ctrl "xx_diffkr" only set in FWD tests).
- post PR #471 (pkg/ctrl cleanup): update few local source code, mainly for
experiment global_oce_cs32 & llc90.
checkpoint67z (2021/06/12) synchronised with main MITgcm code.
- post PR #445 (ctrl & shelfice): update customized source code for experiment
shelfice_remeshing
- post PR #446 (store directives): update all 6 output_adm (oce_cs32 & llc90);
since these 2 experiments use real*4 storage (isbyte=4), get changes (for
all 6) in AD-monitor and in AD-grad for oce_cs32 primary test.
checkpoint67y (2021/05/05) synchronised with main MITgcm code.
- post PR #456 (fix shelfice pLoc): update shelfice_remeshing alternative
"vrm" output (output_vrm.txt).
- AD experiments global_oce_cs32 & llc90: Reduce adjMonitorFreq to get few
AD-Monitor output while running these short tests (e.g., with testreport);
update all 2+4 reference output_adm from these 2 eperiments.
checkpoint67x (2021/04/12) synchronised with main MITgcm code.
- post PR #449 (fix TICES storage): update ADM output of exp global_oce_llc90,
ecco_v4 test only.
- post PR #438: update 2 ADM output from exp.: global_oce_llc90.
Fixing missing re-initialisation of recip_hFac change gradient-check of
ecco_v4 & ecmwf AD tests. Update reference output (from engaging, gfortran).
- post PR #433: update FWD output of exp.: global_ocean.gm_k3d & .gm_res since
both use quasiHydrostatic=T (-> affects results @ machine trunc. level).
checkpoint67w (2021/03/06) synchronised with main MITgcm code.
- add MOC sensitivity cost in experiment global_oce_cs32/input_ad.sens/ and
generate new ADM output, now from villon.mit.edu (previously from engaging)
checkpoint67v (2021/02/03) synchronised with main MITgcm code.
- global_oce_llc90 experiment:
1) clean/simplify parameter files location:
* move un-used (in any FWD or AD exp) param files from input/ into
input/unused/
* param files which are not used in any FWD exp (but only used in some AD
exp): move them from input/ to input_ad/
* simplify "prepare_run" from 4 FWD input dir by removing it's own dir.
* Ajoint input dir: since local "prepare_run" is no longer linking all files
from corresponding FWD input dir, make a copy of few needed files.
2) Bring back the use of viscFacInAd:
before PR #384, the effect of viscFacAdj, was ignored. Bring it back by
defining the (new) corresponding CPP option: AUTODIFF_ALLOW_VISCFACADJ
(in AUTODIFF_OPTIONS.h), uncomment viscFacInAd setting in data.autodiff
and update all 4 AD reference outputs (since viscFacInAd=2 is now active).
- global_oce_llc90 Adjoint experiment: comment out "viscFacInAd=2." in
data.autodiff since it was previously inactive until PR #384 code fix
but would now require to define AUTODIFF_ALLOW_VISCFACADJ to be used.
- update output of experiment "shelfice_remeshing" following changes in
solve_pentadiagonal.F (-> affects results @ machine trunc. level), PR #410.
checkpoint67u (2020/12/30) synchronised with main MITgcm code.
- update FWD output of experiment "global_oce_llc90" following changes in
seaice_lsr.F (-> affects results @ machine trunc. level), PR #369.
- update some AD output of experiments "global_oce_cs32" & "global_oce_llc90"
following fix for self-adjoint cg2d with nonlinFreeSurf > 1 (PR #392).
checkpoint67t (2020/11/30) synchronised with main MITgcm code.
checkpoint67s (2020/07/31) synchronised with main MITgcm code.
- cleaning experiment "packages.conf":
1) add a 1 line description at the top ;
2) use similar ordering of pkgs in packages.conf, same as for main
MITgcm/verification (see doc/tag-index) ;
3) remove few unused pkgs (timeave, mnc).
checkpoint67r (2020/06/04) synchronised with main MITgcm code.
checkpoint67q (2020/03/19) synchronised with main MITgcm code.
- Remove completely "global_oce_biogeo_bling" experiment since it has been
moved to main MITgcm repository, in verification, on Dec 7, 2019 (PR #307).
checkpoint67p (2020/02/12) synchronised with main MITgcm code.
- Update code of experiment "shelice_remeshing" after main MITgcm PR #124
( https://github.com/MITgcm/MITgcm/pull/124 ) was merged in on Dec 17, 2019.
checkpoint67o (2019/12/23) synchronised with main MITgcm code.
- update results of experiment "shelice_remeshing" following pkg/shelfice
changes from PR #311 (Shelfice implicit drag).
- move here, in dir "shelice_remeshing", the original shelfice_remeshing
experiment from PR #124 "Branch Remeshing" of main MITgcm repos,
with suffix "_vrm" (for: Vertical ReMeshing).
- update results of experiment "offline_cheapaml" following pkg/cheapaml
changes from PR #254
checkpoint67n (2019/11/26) synchronised with main MITgcm code.
- clean-up adjoint code dir of experiment global_oce_biogeo_bling
- new output (generated on new ref. machine "villon") for the 2 GM-K3D
experiments: global_ocean.gm_k3d & gm_res
checkpoint67m (2019/10/16) synchronised with main MITgcm code.
- update output of exp. global_oce_llc90 (all 4 FWD and 2 ADM)
after merging PR #219 on Aug 15.
checkpoint67l (2019/08/29) synchronised with main MITgcm code.
- update output of exp. shelfice_remeshing after merging PR #219 on Aug 15.
- add (TAF) Adjoint set-up to experiment global_oce_biogeo_bling
checkpoint67k (2019/07/19) synchronised with main MITgcm code.
2019/06/19:
- new experiment "atm_strato" (from Matt Kasoar) with enough resolution
in stratosphere to test stratospheric ozone absorption.
checkpoint67j (2019/06/18) synchronised with main MITgcm code.
- update output of experiment global_oce_biogeo_bling (new version of
pkg/bling from PR #243)
checkpoint67i (2019/05/08) synchronised with main MITgcm code.
- update global_oce_cs32 & global_oce_llc90 customized code following
PR #96 modifications in mom_calc_visc.F
checkpoint67h (2019/03/21) synchronised with main MITgcm code.
checkpoint67g (2019/01/03) synchronised with main MITgcm code.
checkpoint67f (2018/11/23) synchronised with main MITgcm code.
- update results of experiment atm_gray (secondary test, ape) after
changing/fixing dependence on water-vapor in wv_exponent=-1 case.
checkpoint67e (2018/10/16) synchronised with main MITgcm code.
2018/10/10: verification_other development moved to GitHub and
CVS repos made read-only
- update (on Sep 12) remaining "data.seaice" from global_oce_cs32
& global_oce_llc90 experiments.
checkpoint67d (2018/09/04) synchronised with main MITgcm code.
- update "data.seaice" from offline_cheapaml/input.dyn by putting back
old seaice parameter default (see PR 116. merged on Aug 25, 2018)
Remain to update: all data.seaice from global_oce_cs32 & global_oce_llc90
- update SIZE.h comments
checkpoint67b (2018/05/05) synchronised with main MITgcm code.
checkpoint67a (2018/03/11) synchronised with main MITgcm code.
checkpoint66o (2018/01/30) synchronised with final CVS tag of main MITgcm code.
checkpoint66n (2018/01/18) synchronised with main MITgcm code.
checkpoint66m (2017/12/12) synchronised with main MITgcm code.
checkpoint66l (2017/10/24) synchronised with main MITgcm code.
checkpoint66k (2017/09/20) synchronised with main MITgcm code.
- update results of experiment global_oce_biogeo_bling (changes in
pkg/bling on 17/09/02, see doc/tag-index).
checkpoint66j (2017/08/15) synchronised with main MITgcm code.
- update results of experiments: atm_gray & cpl_gray+ocn after changing
the way atm-phys momentum tendencies are applied to C-grid dynamics.
checkpoint66i (2017/07/18) synchronised with main MITgcm code.
- experiment "offline_cheapaml": change to use directly the wind
(instead of relative wind) and update output
checkpoint66h (2017/06/02) synchronised with main MITgcm code.
checkpoint66g (2017/04/24) synchronised with main MITgcm code.
checkpoint66f (2017/04/06) synchronised with main MITgcm code.
checkpoint66e (2017/03/14) synchronised with main MITgcm code.
checkpoint66d (2017/02/13) synchronised with main MITgcm code.
checkpoint66c (2017/01/19) synchronised with main MITgcm code.
checkpoint66b (2016/12/01) synchronised with main MITgcm code.
checkpoint66a (2016/10/18) synchronised with main MITgcm code.
- after adding parenthesis in main diagonal calculation of implicit vertical
diffusion matrix (impldiff.F & gad_implicit_r.F), update output of exp.:
global_ocean.gm_k3d, shelfice_remeshing, global_oce_cs32, global_oce_llc90
and cpl_gray+ocn.
checkpoint65z (2016/09/28) synchronised with main MITgcm code.
checkpoint65y (2016/07/29) synchronised with main MITgcm code.
2016/07/07:
- moved old input/code for shelfice_remeshing to MITgcm_contrib/dgoldber/CPL1
- now shelfice_remeshing only tests vertical remeshing
2016/06/29:
- add exp. "global_oce_cs32" to daily gfortran+mpi test on baudelaire
- add exp. "global_oce_biogeo_bling" to ifort daily test on baudelaire
checkpoint65x (2016/06/11) synchronised with main MITgcm code.
2016/05/19-27:
- new pkg "bling" added and tested (daily) with verification experiment
global_oce_biogeo_bling (see MITgcm_contrib/bling/README.txt)
checkpoint65w (2016/05/12) synchronised with main MITgcm code.
checkpoint65v (2016/04/08) synchronised with main MITgcm code.
2016/04/05: remove Ro_SeaLevel from ATM experiment parameter files;
checkpoint65u (2016/03/14) synchronised with main MITgcm code.
2016/03/01:
- exp. shelfice_remeshing tested every night (gfortran & ifort)
checkpoint65s (2016/01/13) synchronised with main MITgcm code.
checkpoint65r (2015/12/21) synchronised with main MITgcm code.
2015/12/13:
- atm_gray: add secondary testing set-up using fixed SST (APE)
and improved radiation code from Ruth Geen.
2015/12/11:
- add experiment "shelfice_remeshing" (Dan & Jim)
checkpoint65q (2015/11/18) synchronised with main MITgcm code.
2015/11/12:
- update cpl_gray+ocn/share-code (ATMIDS.h & OCNIDS.h) and coupler parameter
file (in input_cpl) following coupling pkg changes.
2015/11/04:
- switch from #define GLOBAL_SUM_SEND_RECV to #define GLOBAL_SUM_ORDER_TILES
(i.e., the new default) experiments atm_gray (3 code dir),
global_ocean.gm_k3d & global_ocean.gm_res ; change cpl_gray+ocn (code_atm
& ocn) to also use the new default (#define GLOBAL_SUM_ORDER_TILES).
checkpoint65p (2015/10/23) synchronised with main MITgcm code.
2015/10/23:
- fix cpl_gray+ocn: specify an existing SST file (in data.atm_phys) since
old one was been removed on Jan 22, 2015
checkpoint65n (2015/07/29) synchronised with main MITgcm code.
checkpoint65m (2015/06/15) synchronised with main MITgcm code.
checkpoint65j (2015/02/25) synchronised with main MITgcm code.
2015/02/22:
- update global_ocean.gm_k3d & global_ocean.gm_res output after fixing
pkg/gmredi related code.
checkpoint65i (2015/01/23) synchronised with main MITgcm code.
2015/01/22:
- update atm_gray/input set-up: start from a 1.yr run pickup file (run with
atmPhys_stepSST=F) using closer to present new SST file: SST_symEx3.bin ;
and then switch on atmPhys_stepSST=True and use Qflux file: Qflux_w90.bin
2015/01/21:
- update output of experiments atm_gray & cpl_gray+ocean after fixing
bug in frictional heating in S/R ATM_PHYS_TENDENCY_APPLY_V.
2015/01/14:
- add a test case using ALLOW_EDDYPSI + gmredi K3D scheme (from Michael Bates)
similar to global_ocean.90x40x15 & tutorial_global_oce_latlon experiments;
checkpoint65h (2014/12/17) synchronised with main MITgcm code.
checkpoint65f (2014/10/13) synchronised with main MITgcm code.
2014/10/06:
- update cpl_gray+ocn set-up: switch on saisonal insolation and add two
thin-walls in the ocean from North pole down to 34.S (Double-Drake config);
also adjust diagnostics to get climatological seasonal output.
checkpoint65e (2014/09/28) synchronised with main MITgcm code.
checkpoint65c (2014/08/30) synchronised with main MITgcm code.
checkpoint65a (2014/07/27) synchronised with main MITgcm code.
checkpoint65 (2014/07/18) synchronised with main MITgcm code.
checkpoint64z (2014/07/10) synchronised with main MITgcm code.
checkpoint64x (2014/05/24) synchronised with main MITgcm code.
2014/05/23:
- add experiment global_oce_biogeo_bling (see MITgcm_contrib/bling/README.txt)
2014/05/21:
atm_gray & cpl_gray+ocn: change convection parameters:
switch on "do_virtual" and "do_shallower" (recommended by Paul O'Gorman)
but keep default RH threshold (=0.8)
Update output of cpl_gray+ocn (no need to update atm_gray output,
too short cold start run).
global_ocean.gm_k3d: Update output after fixing minor bugs relating to
finding the +eigenvalues/vectors (in gmredi_calc_eigs.F & gmredi_k3d.F):
was getting only 3 matching digits for cg2d.
New output generated on baudelaire using gfortran and "-devel" option.
Added to bi-weekly ifort+MPI test on acesgrid.
2014/05/11:
- update atm_gray & cpl_gray+ocn output after changes in atmospheric p*:
+ Switch to more accurate p* coordinate slope term (calc_grad_phi_hyd.F)
+ use constant reference Pot.Temp (thetaConst) instead of tRef
+ Acount for true p* correction in theta <-> T conversion in pkg/atm_phys
2014/05/07:
- add a test case for gmredi K3D scheme (set up from Michael Bates)
similar to global_ocean.90x40x15 & tutorial_global_oce_latlon experiments;
daily test on acesgrid (using gfortran with MPI).
checkpoint64w (2014/05/02) synchronised with main MITgcm code.
checkpoint64v (2014/04/11) synchronised with main MITgcm code.
checkpoint64r (2013/12/08) synchronised with main MITgcm code.
checkpoint64p (2013/10/20) synchronised with main MITgcm code.
2013/09/25:
- add simple atm-gray + ocean coupled cs-32 aquaplanet setup
in dir=cpl_gray+ocn; for now, no land, no seaice.
checkpoint64o (2013/09/25) synchronised with main MITgcm code.
checkpoint64m (2013/08/13) synchronised with main MITgcm code.
checkpoint64k (2013/07/23) synchronised with main MITgcm code.
2013/07/07:
- add a 3rd atm_gray set-up, CS-32 with 26 levels and evolving SST
checkpoint64i (2013/06/18) synchronised with main MITgcm code.
2013/06/12:
- add the 2 working set-up (atm_gray & offline_cheapaml) to one acesgrid
daily test (using gfortran with MPI & mth and testing also the restart)
2013/06/10:
- add secondary test (offline_cheapaml/input.dyn/) using seaice-dynamics
and convergent wind to produce precip.
checkpoint64h (2013/05/26)
- add this file and make synchronised tag with main MITgcm code.
2013/05/22:
- add simple experiment "offline_cheapaml" (cartesian-coordinate zonally
periodic channel, similar to offline_exf_seaice/input.thsice)
using cheapAML pkg without ocean time-stepping (offline) but with seaice.
2013/05/08:
- update atm_gray experiments to use new pkg "atm_phys" (instead of mypackage)
2012/09/11:
- add code (for now, using "mypackage") and 2 example experiments
using gray atmospheric physics in dir "atm_gray"; see atm_gray/README.
2012/02/04:
- Create dir "verification_other" in Contrib area (MITgcm_contrib) for
additional - not automatically tested - experiments, some might or
might not be up to date with the main MITgcm code.
- Move from MITgcm/verification to Contrib/verification_other
the following un-tested set-up:
global1x1_tot/
global2x2_tot/
lab_sea/code_ad_seaice_ocean/
input_ad_seaice_ocean/
code_ad_seaice_only/
input_ad_seaice_only/
natl_box_adjoint/
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