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.github/workflows/ci-wsl.yml

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@@ -13,7 +13,7 @@ jobs:
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windows:
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runs-on: windows-latest
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name: Ubuntu 20.04
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# Following https://github.com/sagemath/sage/issues/25206#comment:63
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# Following https://github.com/sagemath/sage/issues/25206
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steps:
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- name: Configure git
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run: git config --global core.symlinks true

build/pkgs/ecl/SPKG.rst

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@@ -43,7 +43,7 @@ Special Update/Build Instructions
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- Do NOT quote SAGE_LOCAL when setting CPPFLAGS and/or LDFLAGS,
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in spkg-install as this caused the build to break. See
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https://github.com/sagemath/sage/issues/10187#comment:117
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https://github.com/sagemath/sage/issues/10187
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- TODO: Add the ECL test suite, and an spkg-check file to run it.
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- TODO: Make ECL use Sage's Boehm GC on MacOS X as well (but perhaps

build/pkgs/ecm/spkg-install.in

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@@ -92,10 +92,10 @@ else
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# Don't add debug symbols because configure otherwise
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# fails due to a bus error in Apple's 'ld' when trying
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# to determine if global symbols are prefixed with an
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# underscore (cf. https://github.com/sagemath/sage/issues/5847#comment:35 ff.):
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# underscore (cf. https://github.com/sagemath/sage/issues/5847 ff.):
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echo >&2 "Warning: Disabling debug symbols on MacOS X 10.5" \
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"PowerPC because of a linker (?) bug."
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echo >&2 "See https://github.com/sagemath/sage/issues/5847#comment:35" \
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echo >&2 "See https://github.com/sagemath/sage/issues/5847" \
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"ff. for details."
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echo >&2
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CFLAGS="-O3 $ORIGINAL_CFLAGS"

build/pkgs/fflas_ffpack/spkg-install.in

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@@ -30,7 +30,7 @@ if [ -z "$CONFIG_SHELL" ]; then
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fi
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# We disable openmp because of build failures, see
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# https://github.com/sagemath/sage/issues/17635#comment:67
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# https://github.com/sagemath/sage/issues/17635
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sdh_configure --with-default="$SAGE_LOCAL" --with-blas-libs="$LINBOX_BLAS" \
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"$LINBOX_BLAS_CFLAGS" --disable-static \
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--enable-precompilation $FFLAS_FFPACK_CONFIGURE

build/pkgs/gap/spkg-install.in

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@@ -53,7 +53,7 @@ sdh_install pkg/GAPDoc-* pkg/primgrp-* pkg/SmallGrp-* pkg/transgrp "$GAP_ROOT"/p
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# typically "expected" to be loaded: These are the default packages that are
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# autoloaded at GAP startup (via the PackagesToLoad UserPreference) with an
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# out-of-the-box GAP installation; see
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# https://github.com/sagemath/sage/issues/22626#comment:393 for discussion on this
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# https://github.com/sagemath/sage/issues/22626 for discussion on this
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#
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# Also include atlasrep which is a dependency of tomlib
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sdh_install \

build/pkgs/gdb/distros/conda.txt

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@@ -1,2 +1,2 @@
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# Disabled for now because of https://github.com/sagemath/sage/issues/30845#comment:269
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# Disabled for now because of https://github.com/sagemath/sage/issues/30845
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# gdb

build/pkgs/glpk/patches/error_recovery.patch

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@@ -1,6 +1,6 @@
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From: Jeroen Demeyer
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Allow error recovery. See discussion at
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https://github.com/sagemath/sage/issues/20710#comment:18
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https://github.com/sagemath/sage/issues/20710
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diff --git a/src/env/error.c b/src/env/error.c
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index a898b76..154de0f 100644

build/pkgs/glpk/spkg-install.in

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@@ -1,6 +1,6 @@
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cd src/
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# Use newer version of config.guess and config.sub (see Trac #19713)
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# Use newer version of config.guess and config.sub (see Github issue #19713)
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cp "$SAGE_ROOT"/config/config.* .
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# Note: The following doesn't work with spaces in `$SAGE_LOCAL`, but we don't
@@ -26,7 +26,7 @@ sdh_configure --with-gmp --disable-static
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sdh_make
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# Remove old libraries to make sure we can downgrade it if needed.
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# See https://github.com/sagemath/sage/issues/23596#comment:4 and later.
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# See https://github.com/sagemath/sage/issues/23596.
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rm -f "$SAGE_LOCAL"/lib/libglpk.*
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sdh_make_install

build/pkgs/linbox/spkg-install.in

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@@ -24,7 +24,7 @@ fi
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LINBOX_CONFIGURE="--without-fplll $LINBOX_CONFIGURE"
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# We disable openmp because of build failures, see
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# https://github.com/sagemath/sage/issues/17635#comment:67
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# https://github.com/sagemath/sage/issues/17635
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# We disable ocl because of build failures, see
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# https://github.com/sagemath/sage/issues/32076
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sdh_configure --with-default="$SAGE_LOCAL" \

build/pkgs/maxima/spkg-install.in

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@@ -1,6 +1,6 @@
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# Sometimes, ECL gives interactive prompts when something goes wrong
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# during the build. Avoid this by redirecting stdin from /dev/null.
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# See https://github.com/sagemath/sage/issues/11884#comment:34
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# See https://github.com/sagemath/sage/issues/11884
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exec </dev/null
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build/pkgs/meataxe/spkg-install.in

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@@ -5,7 +5,7 @@
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# marked as installed but the run-time check for the matrix_gfpn_dense
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# module checks whether it can be imported. We need to ensure that these
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# two conditions are equivalent, otherwise strange things can happen.
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# See also https://github.com/sagemath/sage/issues/24359#comment:154
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# See also https://github.com/sagemath/sage/issues/24359
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#
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# This also deletes the static library left behind from the installation
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# of MeatAxe (as opposed to SharedMeatAxe).

build/pkgs/numpy/spkg-install.in

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@@ -7,7 +7,7 @@ if [ `uname` = "Darwin" ]; then
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unset ATLAS
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unset BLAS
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unset LAPACK
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# https://github.com/sagemath/sage/issues/34110#comment:35
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# https://github.com/sagemath/sage/issues/34110
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# The fix for "reciprocal" (affected by a clang compiler bug) in
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# https://github.com/numpy/numpy/pull/19926 relies on -ftrapping-math
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# being used when Apple clang v12+ is used.
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@@ -1,3 +1,3 @@
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ptyprocess ==0.5.1
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# https://github.com/sagemath/sage/issues/31280#comment:42 and following
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# https://github.com/sagemath/sage/issues/31280
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# sagelib is not compatible with ptyprocess 0.5.2, 0.6, and 0.7

build/sage_bootstrap/uncompress/tar_file.py

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@@ -41,7 +41,7 @@ class SageBaseTarFile(tarfile.TarFile):
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time (the current time), not the timestamps stored in the tarball. This
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is meant to work around https://bugs.python.org/issue32773
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See https://github.com/sagemath/sage/issues/20218#comment:16 and
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See https://github.com/sagemath/sage/issues/20218 and
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https://github.com/sagemath/sage/issues/24567 for more background.
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"""
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src/sage/arith/constants.pxd

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@@ -3,7 +3,7 @@
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# float. We use these instead of decimal constants like 3.1415...
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# because the hex floats are exactly representable as "double", so there
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# shouldn't be any rounding issues in the compiler.
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# See https://github.com/sagemath/sage/issues/23919#comment:15
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# See https://github.com/sagemath/sage/issues/23919
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#
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# Hex floats are standardized in C99, but GCC accepts them
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# unconditionally, also for C++ code.

src/sage/arith/long.pxd

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@@ -296,7 +296,7 @@ cdef inline bint integer_check_long_py(x, long* value, int* err):
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# - BITS_IN_LONG = 63, PyLong_SHIFT = 30
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# - BITS_IN_LONG = 31, PyLong_SHIFT = 15 (python <= 3.10)
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# - BITS_IN_LONG = 31, PyLong_SHIFT = 30 (new in python 3.11)
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# cf. https://github.com/sagemath/sage/issues/33842#comment:130
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# cf. https://github.com/sagemath/sage/issues/33842
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#
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# This way, we know that 1 digit certainly fits in a C long
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# and 4 or more digits never fit.

src/sage/combinat/finite_state_machine.py

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@@ -4887,7 +4887,7 @@ def key_function(s):
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return (s.from_state, s.to_state)
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# We use an OrderedDict instead of a dict in order to have a
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# defined ordering of the transitions in the output. See
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# https://github.com/sagemath/sage/issues/16580#comment:3 . As the
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# https://github.com/sagemath/sage/issues/16580. As the
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# transitions have to be sorted anyway, the performance
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# penalty should be bearable; nevertheless, this is only
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# required for doctests.

src/sage/cpython/atexit.pyx

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@@ -51,7 +51,7 @@ cdef class restore_atexit:
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sage: import atexit
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sage: from sage.cpython.atexit import restore_atexit
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sage: def handler(*args, **kwargs):
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....: import sys # see https://github.com/sagemath/sage/issues/25270#comment:56
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....: import sys # see https://github.com/sagemath/sage/issues/25270
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....: sys.stdout.write(str((args, kwargs)))
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....: sys.stdout.write('\n')
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sage: atexit.register(handler, 1, 2, c=3)

src/sage/groups/additive_abelian/additive_abelian_wrapper.py

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(0 : 1 : 0)
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sage: 3000000000000001 * M.0
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(4 : -7 : 1)
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sage: M == loads(dumps(M)) # known bug, see https://github.com/sagemath/sage/issues/sage_trac/ticket/11599#comment:7
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sage: M == loads(dumps(M)) # known bug, see https://github.com/sagemath/sage/issues/sage_trac/ticket/11599
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True
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TESTS:

src/sage/matrix/matrix_polynomial_dense.pyx

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@@ -781,7 +781,7 @@ cdef class Matrix_polynomial_dense(Matrix_generic_dense):
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2021), it would be highly beneficial to use conversions and rely on
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polynomials with matrix coefficients when the matrix size is
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"large" and the degree "small", see
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:trac:`31472#comment:5`.
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:trac:`31472`.
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"""
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if d <= 0:
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raise ValueError("the precision must be positive")

src/sage/misc/compat.py

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elif sys.platform == 'darwin':
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# On OSX non-standard library paths are not automatically found by the
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# find_library implementation without setting DYLD_LIBRARY_PATH; see
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# https://github.com/sagemath/sage/issues/21399#comment:25
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# https://github.com/sagemath/sage/issues/21399
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from ctypes.util import find_library as _orig_find_library
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def _find_library(name):

src/sage/schemes/elliptic_curves/ell_field.py

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verbose("Adjoining Y-coordinates of %s-torsion points" % l)
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# THEOREM (Cremona, https://github.com/sagemath/sage/issues/11905#comment:21).
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# THEOREM (Cremona, https://github.com/sagemath/sage/issues/11905).
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# Let K be a field, E an elliptic curve over K and p an odd
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# prime number. Assume that K contains all roots of the
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# p-division polynomial of E. Then either K contains all

src/sage/schemes/elliptic_curves/ell_torsion.py

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sage: type(T)
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<class 'sage.schemes.elliptic_curves.ell_torsion.EllipticCurveTorsionSubgroup_with_category'>
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sage: T == loads(dumps(T)) # known bug, see https://github.com/sagemath/sage/issues/11599#comment:7
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sage: T == loads(dumps(T)) # known bug, see https://github.com/sagemath/sage/issues/11599
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True
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"""
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self.__E = E

src/sage_docbuild/utils.py

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least two known issues:
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* On versions of Cygwin prior to 3.0.0 there were bugs in mmap handling
112-
on threads (see :trac:`27214#comment:25`).
112+
on threads (see :trac:`27214`).
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* When PARI is built with multi-threading support, forking a Sage
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process from a thread leaves the main Pari interface instance broken
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(see :trac:`26608#comment:38`).
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(see :trac:`26608`).
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In the future this may be replaced by a generalized version of the more
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robust parallel processing implementation from ``sage.doctest.forker``.

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