validate_3d.py

# Copyright (c) MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#     http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import argparse
import distutils.util
import logging
import sys

import validate


def strtobool(val):
    return bool(distutils.util.strtobool(val))


def main():
    parser = argparse.ArgumentParser()

    parser.add_argument("-s", "--seed", type=int, default=23)
    parser.add_argument("--dimensions", type=int, default=3)

    parser.add_argument("-n", "--network", default="bunet", choices=["unet", "bunet"])
    parser.add_argument("-c", "--channels", type=int, default=32)
    parser.add_argument("-f", "--folds", type=int, default=10)

    parser.add_argument("-i", "--input", default="/workspace/data/deepgrow/3D/MSD_Task09_Spleen/dataset.json")
    parser.add_argument("-o", "--output", default="eval3D")
    parser.add_argument("--save_seg", type=strtobool, default="false")
    parser.add_argument("--cache_dir", type=str, default=None)

    parser.add_argument("-g", "--use_gpu", type=strtobool, default="true")
    parser.add_argument("-b", "--batch", type=int, default=1)
    parser.add_argument("-t", "--limit", type=int, default=20)
    parser.add_argument("-m", "--model_path", default="output3D/model.pt")
    parser.add_argument("--roi_size", default="[256, 256, 256]")
    parser.add_argument("--model_size", default="[128, 128, 128]")

    parser.add_argument("-iv", "--max_val_interactions", default="[0,1,2,5,10,15]")
    parser.add_argument("--multi_gpu", type=strtobool, default="false")
    parser.add_argument("--local_rank", type=int, default=0)

    args = parser.parse_args()
    validate.run(args)


if __name__ == "__main__":
    logging.basicConfig(
        stream=sys.stdout,
        level=logging.INFO,
        format="[%(asctime)s.%(msecs)03d][%(levelname)5s] - %(message)s",
        datefmt="%Y-%m-%d %H:%M:%S",
    )
    main()