Fixing long summarization timeouts & mics (#1151)

* [utbot-rd]
fixing long delays in summarization, fixing sarif reports resource root creation, fixing kryo serialization error, fixing idea thread relating problems

* [utbot-rd]
compilation fix

Author: Domonion

.gitignore

@@ -7,3 +7,4 @@ target/
 .idea/
 .gradle/
 *.log
+*.rdgen

utbot-framework/src/main/kotlin/org/utbot/framework/plugin/sarif/util/ClassUtil.kt

@@ -56,7 +56,7 @@ object ClassUtil {
         val clazz = classLoader.tryLoadClass(classFqn)
             ?: return null
         val sourceFileName = withUtContext(UtContext(classLoader)) {
-            Instrumenter.computeSourceFileName(clazz) // finds the file name in bytecode
+            Instrumenter.adapter.computeSourceFileName(clazz) // finds the file name in bytecode
         } ?: return null
         val candidates = sourceCodeFiles.filter { sourceCodeFile ->
             sourceCodeFile.endsWith(File(sourceFileName))

utbot-framework/src/main/kotlin/org/utbot/framework/process/EngineMain.kt

@@ -23,8 +23,8 @@ import org.utbot.framework.plugin.api.util.id
 import org.utbot.framework.plugin.api.util.jClass
 import org.utbot.framework.plugin.services.JdkInfo
 import org.utbot.framework.process.generated.*
-import org.utbot.framework.util.Conflict
 import org.utbot.framework.util.ConflictTriggers
+import org.utbot.instrumentation.instrumentation.instrumenter.Instrumenter
 import org.utbot.instrumentation.util.KryoHelper
 import org.utbot.rd.CallsSynchronizer
 import org.utbot.rd.ClientProtocolBuilder
@@ -33,13 +33,9 @@ import org.utbot.rd.loggers.UtRdKLoggerFactory
 import org.utbot.sarif.RdSourceFindingStrategyFacade
 import org.utbot.sarif.SarifReport
 import org.utbot.summary.summarize
-import soot.SootMethod
-import soot.UnitPatchingChain
-import soot.util.HashChain
 import java.io.File
 import java.net.URLClassLoader
 import java.nio.file.Paths
-import java.util.*
 import kotlin.reflect.full.functions
 import kotlin.time.Duration.Companion.seconds
 
@@ -56,6 +52,7 @@ suspend fun main(args: Array<String>) = runBlocking {
     ClientProtocolBuilder().withProtocolTimeout(messageFromMainTimeoutMillis).start(port) {
         settingsModel
         rdSourceFindingStrategy
+        rdInstrumenterAdapter
 
         AbstractSettings.setupFactory(RdSettingsContainerFactory(protocol))
         val kryoHelper = KryoHelper(lifetime)
@@ -82,6 +79,7 @@ private fun EngineProcessModel.setup(
     }
     synchronizer.measureExecutionForTermination(createTestGenerator) { params ->
         AnalyticsConfigureUtil.configureML()
+        Instrumenter.adapter = RdInstrumenter(realProtocol)
         testGenerator = TestCaseGenerator(buildDirs = params.buildDir.map { Paths.get(it) },
             classpath = params.classpath,
             dependencyPaths = params.dependencyPaths,
@@ -150,7 +148,7 @@ private fun EngineProcessModel.setup(
         codeGenerator.generateAsStringWithTestReport(testSets[testSetsId]!!)
             .let {
                 testGenerationReports.add(it.testsGenerationReport)
-                RenderResult(it.generatedCode, kryoHelper.writeObject(it.utilClassKind))
+                RenderResult(it.generatedCode, it.utilClassKind?.javaClass?.simpleName)
             }
     }
     synchronizer.measureExecutionForTermination(stopProcess) { synchronizer.stopProtocol() }
@@ -177,6 +175,7 @@ private fun EngineProcessModel.setup(
     }
     synchronizer.measureExecutionForTermination(writeSarifReport) { params ->
         val reportFilePath = Paths.get(params.reportFilePath)
+        reportFilePath.parent.toFile().mkdirs()
         reportFilePath.toFile().writeText(
             SarifReport(
                 testSets[params.testSetsId]!!,

utbot-framework/src/main/kotlin/org/utbot/framework/process/RdInstrumenter.kt

@@ -0,0 +1,36 @@
+package org.utbot.framework.process
+
+import com.jetbrains.rd.framework.IProtocol
+import kotlinx.coroutines.runBlocking
+import mu.KotlinLogging
+import org.utbot.framework.process.generated.ComputeSourceFileByClassArguments
+import org.utbot.framework.process.generated.rdInstrumenterAdapter
+import org.utbot.instrumentation.instrumentation.instrumenter.InstrumenterAdapter
+import java.io.File
+import java.nio.file.Path
+
+private val logger = KotlinLogging.logger { }
+
+class RdInstrumenter(private val protocol: IProtocol): InstrumenterAdapter() {
+    override fun computeSourceFileByClass(
+        className: String,
+        packageName: String?,
+        directoryToSearchRecursively: Path
+    ): File? = runBlocking {
+        logger.debug { "starting computeSourceFileByClass with classname - $className" }
+        val result = try {
+             protocol.rdInstrumenterAdapter.computeSourceFileByClass.startSuspending(
+                ComputeSourceFileByClassArguments(
+                    className,
+                    packageName
+                )
+            )
+        }
+        catch(e: Exception) {
+            logger.error(e) { "error during computeSourceFileByClass" }
+            throw e
+        }
+        logger.debug { "computeSourceFileByClass result for $className from idea: $result"}
+        return@runBlocking result?.let { File(it) }
+    }
+}

utbot-framework/src/main/kotlin/org/utbot/framework/process/generated/EngineProcessModel.Generated.kt

@@ -15,7 +15,7 @@ import kotlin.jvm.JvmStatic
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:20]
+ * #### Generated from [EngineProcessModel.kt:30]
  */
 class EngineProcessModel private constructor(
     private val _setupUtContext: RdCall<SetupContextParams, Unit>,
@@ -73,7 +73,7 @@ class EngineProcessModel private constructor(
         }
 
 
-        const val serializationHash = 4674749231408610997L
+        const val serializationHash = 3907671513584285891L
 
     }
     override val serializersOwner: ISerializersOwner get() = EngineProcessModel
@@ -180,7 +180,7 @@ val IProtocol.engineProcessModel get() = getOrCreateExtension(EngineProcessModel
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:89]
+ * #### Generated from [EngineProcessModel.kt:99]
  */
 data class FindMethodParamNamesArguments (
     val classId: ByteArray,
@@ -243,7 +243,7 @@ data class FindMethodParamNamesArguments (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:93]
+ * #### Generated from [EngineProcessModel.kt:103]
  */
 data class FindMethodParamNamesResult (
     val paramNames: ByteArray
@@ -300,7 +300,7 @@ data class FindMethodParamNamesResult (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:82]
+ * #### Generated from [EngineProcessModel.kt:92]
  */
 data class FindMethodsInClassMatchingSelectedArguments (
     val classId: ByteArray,
@@ -363,7 +363,7 @@ data class FindMethodsInClassMatchingSelectedArguments (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:86]
+ * #### Generated from [EngineProcessModel.kt:96]
  */
 data class FindMethodsInClassMatchingSelectedResult (
     val executableIds: ByteArray
@@ -420,7 +420,7 @@ data class FindMethodsInClassMatchingSelectedResult (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:32]
+ * #### Generated from [EngineProcessModel.kt:42]
  */
 data class GenerateParams (
     val mockInstalled: Boolean,
@@ -543,7 +543,7 @@ data class GenerateParams (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:50]
+ * #### Generated from [EngineProcessModel.kt:60]
  */
 data class GenerateResult (
     val notEmptyCases: Int,
@@ -606,7 +606,7 @@ data class GenerateResult (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:101]
+ * #### Generated from [EngineProcessModel.kt:111]
  */
 data class GenerateTestReportArgs (
     val eventLogMessage: String?,
@@ -699,7 +699,7 @@ data class GenerateTestReportArgs (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:110]
+ * #### Generated from [EngineProcessModel.kt:120]
  */
 data class GenerateTestReportResult (
     val notifyMessage: String,
@@ -768,7 +768,7 @@ data class GenerateTestReportResult (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:21]
+ * #### Generated from [EngineProcessModel.kt:31]
  */
 data class JdkInfo (
     val path: String,
@@ -831,7 +831,7 @@ data class JdkInfo (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:54]
+ * #### Generated from [EngineProcessModel.kt:64]
  */
 data class RenderParams (
     val testSetsId: Long,
@@ -972,11 +972,11 @@ data class RenderParams (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:71]
+ * #### Generated from [EngineProcessModel.kt:81]
  */
 data class RenderResult (
     val generatedCode: String,
-    val utilClassKind: ByteArray
+    val utilClassKind: String?
 ) : IPrintable {
     //companion
 
@@ -986,13 +986,13 @@ data class RenderResult (
         @Suppress("UNCHECKED_CAST")
         override fun read(ctx: SerializationCtx, buffer: AbstractBuffer): RenderResult  {
             val generatedCode = buffer.readString()
-            val utilClassKind = buffer.readByteArray()
+            val utilClassKind = buffer.readNullable { buffer.readString() }
             return RenderResult(generatedCode, utilClassKind)
         }
 
         override fun write(ctx: SerializationCtx, buffer: AbstractBuffer, value: RenderResult)  {
             buffer.writeString(value.generatedCode)
-            buffer.writeByteArray(value.utilClassKind)
+            buffer.writeNullable(value.utilClassKind) { buffer.writeString(it) }
         }
 
 
@@ -1009,15 +1009,15 @@ data class RenderResult (
         other as RenderResult
 
         if (generatedCode != other.generatedCode) return false
-        if (!(utilClassKind contentEquals other.utilClassKind)) return false
+        if (utilClassKind != other.utilClassKind) return false
 
         return true
     }
     //hash code trait
     override fun hashCode(): Int  {
         var __r = 0
         __r = __r*31 + generatedCode.hashCode()
-        __r = __r*31 + utilClassKind.contentHashCode()
+        __r = __r*31 + if (utilClassKind != null) utilClassKind.hashCode() else 0
         return __r
     }
     //pretty print
@@ -1035,7 +1035,7 @@ data class RenderResult (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:75]
+ * #### Generated from [EngineProcessModel.kt:85]
  */
 data class SetupContextParams (
     val classpathForUrlsClassloader: List<String>
@@ -1092,7 +1092,7 @@ data class SetupContextParams (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:78]
+ * #### Generated from [EngineProcessModel.kt:88]
  */
 data class Signature (
     val name: String,
@@ -1155,7 +1155,7 @@ data class Signature (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:26]
+ * #### Generated from [EngineProcessModel.kt:36]
  */
 data class TestGeneratorParams (
     val buildDir: Array<String>,
@@ -1230,7 +1230,7 @@ data class TestGeneratorParams (
 
 
 /**
- * #### Generated from [EngineProcessModel.kt:96]
+ * #### Generated from [EngineProcessModel.kt:106]
  */
 data class WriteSarifReportArguments (
     val testSetsId: Long,

utbot-framework/src/main/kotlin/org/utbot/framework/process/generated/EngineProcessProtocolRoot.Generated.kt

@@ -26,6 +26,7 @@ class EngineProcessProtocolRoot private constructor(
         override fun registerSerializersCore(serializers: ISerializers)  {
             EngineProcessProtocolRoot.register(serializers)
             EngineProcessModel.register(serializers)
+            RdInstrumenterAdapter.register(serializers)
             RdSourceFindingStrategy.register(serializers)
         }