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fderop

cleaned up notebooks, fully added script for saturation, removed ambi…

Sep 15, 2023

bb48f29 · Sep 15, 2023

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1	sample_name	technology	fastq_PE1_path	fastq_barcode_path	fastq_PE2_path
2	BIO_ddseq_4	biorad	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/BIO_ddseq_4__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/BIO_ddseq_4__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/BIO_ddseq_4__R1.LIBDS.fastq.gz
3	EPF_hydrop_1	hydrop_2x384	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/EPF_hydrop_1__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/EPF_hydrop_1__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/EPF_hydrop_1__R1.LIBDS.fastq.gz
4	OHS_s3atac_1	s3atac_1	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/OHS_s3atac_1__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/OHS_s3atac_1__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/OHS_s3atac_1__R1.LIBDS.fastq.gz
5	VIB_10xv2_1	atac_revcomp	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/VIB_10xv2_1__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/VIB_10xv2_1__R1.LIBDS.fastq.gz	/lustre1/project/stg_00002/lcb/fderop/data/00000000_PUMATAC_example_fastq/VIB_10xv2_1__R1.LIBDS.fastq.gz