Merge pull request #16 from katrinleinweber/resolve-DOIs-securely

Hyperlink DOIs to preferred resolver

Author: trvrb

README.md

@@ -24,4 +24,4 @@ Understanding the spatio-temporal patterns of emergence and circulation of new h
 
 ## Citation
 
-[Bedford T, Riley S, Barr IG, Broor S, Chadha M, Cox NJ, Daniels RS, Gunasekaran CP, Hurt AC, Kelso A, Klimov A, Lewis NS, Li X, McCauley JW, Odagiri T, Potdar V, Rambaut A, Shu Y, Skepner E, Smith DJ, Suchard MA, Tashiro M, Wang D, Xu X, Lemey P, Russell CA. 2015. Global circulation patterns of seasonal influenza viruses vary with antigenic drift. Nature 523: 217-220.](http://dx.doi.org/10.1038/nature14460)
+[Bedford T, Riley S, Barr IG, Broor S, Chadha M, Cox NJ, Daniels RS, Gunasekaran CP, Hurt AC, Kelso A, Klimov A, Lewis NS, Li X, McCauley JW, Odagiri T, Potdar V, Rambaut A, Shu Y, Skepner E, Smith DJ, Suchard MA, Tashiro M, Wang D, Xu X, Lemey P, Russell CA. 2015. Global circulation patterns of seasonal influenza viruses vary with antigenic drift. Nature 523: 217-220.](https://doi.org/10.1038/nature14460)

age-structure/README.md

@@ -40,7 +40,7 @@ The air travel data (combined with population demography) suggests that children
 
 ## Mixing
 
-[Mossong et al. (2008)](http://dx.doi.org/10.1371/journal.pmed.0050074) give contact rates between people of different ages in Europe.  [Rohani et al. (2009)](http://dx.doi.org/10.1126/science.1194134) show that this contact matrix works extremely well for modeling pertussis.  
+[Mossong et al. (2008)](https://doi.org/10.1371/journal.pmed.0050074) give contact rates between people of different ages in Europe.  [Rohani et al. (2009)](https://doi.org/10.1126/science.1194134) show that this contact matrix works extremely well for modeling pertussis.  
 
 This matrix suggests that adults contact adults at 26% of the rate that children contact children and that children contact adults (and vice versa) at 21% the rate that children contact children.
 

supplement/supplementary-information.bib

@@ -192,7 +192,7 @@ @article{Smith04
 	Title = {Mapping the antigenic and genetic evolution of influenza virus},
 	Volume = {305},
 	Year = {2004},
-	Bdsk-Url-1 = {http://dx.doi.org/10.1126/science.1097211}}
+	Bdsk-Url-1 = {https://doi.org/10.1126/science.1097211}}
 
 @article{Lin03,
 	Author = {Lin, Juan and Andreasen, Viggo and Casagrandi, Renato and A Levin, Simon},
@@ -289,7 +289,7 @@ @article{BEAST17
 	Volume = {29},
 	Year = {2012},
 	Bdsk-Url-1 = {http://mbe.oxfordjournals.org/content/29/8/1969.abstract},
-	Bdsk-Url-2 = {http://dx.doi.org/10.1093/molbev/mss075}}
+	Bdsk-Url-2 = {https://doi.org/10.1093/molbev/mss075}}
 
 @article{Shapiro06,
 	Author = {Shapiro, B. and Rambaut, A. and Drummond, A.J.},
@@ -311,7 +311,7 @@ @article{IRD
 	Volume = {6},
 	Year = {2012},
 	Bdsk-Url-1 = {http://www.biomedcentral.com/1471-2156/9/68},
-	Bdsk-Url-2 = {http://dx.doi.org/10.1186/1471-2156-9-68}}
+	Bdsk-Url-2 = {https://doi.org/10.1186/1471-2156-9-68}}
 
 @article{Glezen13,
 	Author = {Glezen, W.P. and Schmier, J.K. and Kuehn, C.M. and Ryan, K.J. and Oxford, J.},