-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathresults.tmpl
170 lines (151 loc) · 5.27 KB
/
results.tmpl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
<!DOCTYPE html>
<!--[if IE 8]> <html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!-->
<html class="no-js" lang="en">
<!--<![endif]-->
<head>
<meta name="generator"
content="HTML Tidy for HTML5 (experimental) for Windows https://github.com/w3c/tidy-html5/tree/c63cc39" />
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width" />
<title>Glimmer WebUI: Search</title>
<link rel="stylesheet" href="/bmouler/final/css/normalize.css" />
<link rel="stylesheet" href="/bmouler/final/css/foundation.css" />
<script src="js/vendor/custom.modernizr.js"></script>
<script>
function formSubmit()
{
document.getElementById("history").submit();
}
</script>
</head>
<body>
<nav class="top-bar">
<ul class="title-area">
<!-- Title Area -->
<li class="name">
<h1>
<a href="/bmouler/final/home.html">Glimmer WebUI</a>
</h1>
</li>
<!-- Remove the class "menu-icon" to get rid of menu icon. Take out "Menu" to just have icon alone -->
<li class="toggle-topbar menu-icon">
<a href="#">
<span>Menu</span>
</a>
</li>
</ul>
<section class="top-bar-section">
<!-- Left Nav Section -->
<ul class="left">
<li class="inactive">
<a href="/bmouler/final/home.html">Home</a>
</li>
<li class="active">
<a href="/bmouler/final/glimmer3.html">Search</a>
</li>
<li class="inactive">
<a href="/bmouler/final/history.html">History</a>
</li>
</ul>
<!-- Right Nav Section -->
<ul class="right">
<li class="inactive">
<a href="http://www.cbcb.umd.edu/software/glimmer/glim302notes.pdf">Release Notes</a>
</li>
<li class="inactive">
<a href="/bmouler/final/references.html">References</a>
</li>
<li class="has-form">
<a class="button" href="http://advanced.jhu.edu/">JHU AAP</a>
</li>
</ul>
</section>
</nav>
<div class="row">
<div class="large-12 columns">
<h2>Glimmer Search Results</h2>
<hr />
</div>
</div>
<div class="row">
<div class="large-12 columns">
<form action="/bmouler/final/cgi-bin/save_history.cgi" id="history" method="post">
<fieldset>
<legend>QUERY</legend>
<div class="row">
<div class="large-12 columns">
<h6>The following commands were executed:</h6>
<p><TMPL_VAR NAME=CMD1></p>
<p><TMPL_VAR NAME=CMD2></p>
<p><TMPL_VAR NAME=CMD3></p>
<p><TMPL_VAR NAME=CMD4></p>
<p><TMPL_VAR NAME=CMD5></p>
</div>
</div>
</fieldset>
<fieldset style="width:100%;word-wrap:break-word">
<legend>RESULTS</legend>
<div class="row">
<div class="large-12 columns">
<div style="word-wrap:break-word"><TMPL_VAR NAME=RESULTS></div>
<TMPL_LOOP NAME=TABLE>
<p><b><TMPL_VAR NAME=ORF></b></p>
<div class="row">
<div class="large-4 columns">
<p>Start: <TMPL_VAR NAME=START>
<br>Stop: <TMPL_VAR NAME=FINISH>
<br>Length: <TMPL_VAR NAME=LENGTH> nt
<br>Weight: <TMPL_VAR NAME=WEIGHT> g/mol</p>
</div>
<div class="large-4 columns">
<p>A base count: <TMPL_VAR NAME=COUNTA>
<br>C base count: <TMPL_VAR NAME=COUNTC>
<br>G base count: <TMPL_VAR NAME=COUNTG>
<br>T base count: <TMPL_VAR NAME=COUNTT></p>
</div>
<div class="large-4 columns">
<p>GC content: <TMPL_VAR NAME=GCCONTENT>%</p>
</div>
</div>
<p class="panel" style="word-wrap:break-word"><TMPL_VAR NAME=SEQUENCE></p>
<br>
<br>
</TMPL_LOOP>
<h5>NUMBER OF PREDICTED ORFs: <TMPL_VAR GENECOUNT></h5>
</div>
</div>
</fieldset>
<input name="filename" type="hidden" value="<TMPL_VAR NAME=FILENAME>">
<input name="search_id" type="hidden" value="<TMPL_VAR NAME=SEARCHID>">
<input type="button" name="save_to_database" onclick="formSubmit()" class="large button success expand" value="Save to Database" />
<a href="/bmouler/final/glimmer3.html"><input type="button" name="Search Again" class="large button expand" value="Search Again" /></a>
</form>
</div>
</div>
<script>
document.write('<script src=' +
('__proto__' in {} ? 'js/vendor/zepto' : 'js/vendor/jquery') +
'.js><\/script>')
</script>
<script src="js/foundation.min.js"></script>
<!--
<script src="js/foundation/foundation.js"></script>
<script src="js/foundation/foundation.dropdown.js"></script>
<script src="js/foundation/foundation.placeholder.js"></script>
<script src="js/foundation/foundation.forms.js"></script>
<script src="js/foundation/foundation.alerts.js"></script>
<script src="js/foundation/foundation.magellan.js"></script>
<script src="js/foundation/foundation.reveal.js"></script>
<script src="js/foundation/foundation.tooltips.js"></script>
<script src="js/foundation/foundation.clearing.js"></script>
<script src="js/foundation/foundation.cookie.js"></script>
<script src="js/foundation/foundation.joyride.js"></script>
<script src="js/foundation/foundation.orbit.js"></script>
<script src="js/foundation/foundation.section.js"></script>
<script src="js/foundation/foundation.topbar.js"></script>
-->
<script>
$(document).foundation();
</script></body>
</html>