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setup_for_testing.py
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<td id="L1" class="blob-num js-line-number" data-line-number="1"></td>
<td id="LC1" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span></span></td>
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<td id="L2" class="blob-num js-line-number" data-line-number="2"></td>
<td id="LC2" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span> If we are in a continous testing environment that is memory constrained,</span></td>
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<td id="L3" class="blob-num js-line-number" data-line-number="3"></td>
<td id="LC3" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span> for instance CircleCI which limits memory to 4Gb. We override the ReadImage</span></td>
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<td id="L4" class="blob-num js-line-number" data-line-number="4"></td>
<td id="LC4" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span> function using a decorator that also resamples the image.</span></td>
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<td id="L5" class="blob-num js-line-number" data-line-number="5"></td>
<td id="LC5" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span></span></td>
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<td id="L6" class="blob-num js-line-number" data-line-number="6"></td>
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<td id="L7" class="blob-num js-line-number" data-line-number="7"></td>
<td id="LC7" class="blob-code blob-code-inner js-file-line"><span class="pl-k">import</span> os</td>
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<td id="L8" class="blob-num js-line-number" data-line-number="8"></td>
<td id="LC8" class="blob-code blob-code-inner js-file-line"><span class="pl-k">import</span> SimpleITK <span class="pl-k">as</span> sitk</td>
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<td id="L9" class="blob-num js-line-number" data-line-number="9"></td>
<td id="LC9" class="blob-code blob-code-inner js-file-line">
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<td id="L10" class="blob-num js-line-number" data-line-number="10"></td>
<td id="LC10" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span></span></td>
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<td id="L11" class="blob-num js-line-number" data-line-number="11"></td>
<td id="LC11" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span> A decorator which receives the size to shrink as a parameter.</span></td>
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<td id="L12" class="blob-num js-line-number" data-line-number="12"></td>
<td id="LC12" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span></span></td>
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<td id="L13" class="blob-num js-line-number" data-line-number="13"></td>
<td id="LC13" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">shrink_decorator</span>(<span class="pl-smi">size</span>):</td>
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<td id="L14" class="blob-num js-line-number" data-line-number="14"></td>
<td id="LC14" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">def</span> <span class="pl-en">inner_decorator</span>(<span class="pl-smi">func</span>):</td>
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<td id="L15" class="blob-num js-line-number" data-line-number="15"></td>
<td id="LC15" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">def</span> <span class="pl-en">func_and_resize</span>(<span class="pl-k">*</span><span class="pl-smi">args</span>, <span class="pl-k">**</span><span class="pl-smi">kwargs</span>):</td>
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<td id="L16" class="blob-num js-line-number" data-line-number="16"></td>
<td id="LC16" class="blob-code blob-code-inner js-file-line"> shrink_filter <span class="pl-k">=</span> sitk.ShrinkImageFilter()</td>
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<td id="L17" class="blob-num js-line-number" data-line-number="17"></td>
<td id="LC17" class="blob-code blob-code-inner js-file-line"> shrink_filter.SetShrinkFactor(size)</td>
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<td id="L18" class="blob-num js-line-number" data-line-number="18"></td>
<td id="LC18" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> shrink_filter.Execute(func(<span class="pl-k">*</span>args, <span class="pl-k">**</span>kwargs))</td>
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<td id="L19" class="blob-num js-line-number" data-line-number="19"></td>
<td id="LC19" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> func_and_resize</td>
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<td id="L20" class="blob-num js-line-number" data-line-number="20"></td>
<td id="LC20" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> inner_decorator</td>
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<td id="L22" class="blob-num js-line-number" data-line-number="22"></td>
<td id="LC22" class="blob-code blob-code-inner js-file-line"><span class="pl-k">if</span> os.environ.get(<span class="pl-s"><span class="pl-pds">'</span>SIMPLE_ITK_MEMORY_CONSTRAINED_ENVIRONMENT<span class="pl-pds">'</span></span>):</td>
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<td id="L23" class="blob-num js-line-number" data-line-number="23"></td>
<td id="LC23" class="blob-code blob-code-inner js-file-line"> sitk.ReadImage <span class="pl-k">=</span> shrink_decorator(<span class="pl-c1">4</span>)(sitk.ReadImage)</td>
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