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Minor setup changes
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Diff for: .snakemake-workflow-catalog.yml

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@@ -6,6 +6,6 @@ usage:
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flags: # put your flags here
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software-stack-deployment: # definition of software deployment method (at least one of conda, singularity, or singularity+conda)
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conda: true # whether pipeline works with --use-conda
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singularity: false # whether pipeline works with --use-singularity
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singularity+conda: false # whether pipeline works with --use-singularity --use-conda
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singularity: true # whether pipeline works with --use-singularity
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singularity+conda: true # whether pipeline works with --use-singularity --use-conda
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report: true # add this to confirm that the workflow allows to use 'snakemake --report report.zip' to generate a report containing all results and explanations

Diff for: .template/workflow/Snakefile.tmpl.tmpl

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@@ -3,7 +3,7 @@ configfile: "config/config.yaml"
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module [[ module_name ]]:
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snakefile:
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# TODO replace <release> with desired release
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"https://github.com/[[ owner ]]/[[ repo ]]/raw/<release>/Snakefile"
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"https://github.com/[[ fcaretti ]]/[[ SNPs_from_RNA ]]/raw/<release>/Snakefile"
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config:
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config
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Diff for: config/config.yml

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Diff for: logs/.gitignore

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*
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!.gitignore

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