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Rename repo references (#1593)
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CONTRIBUTING.md

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- [Code of Conduct]
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[apache 2.0 license]: https://opensource.org/licenses/Apache-2.0
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[source code]: https://github.com/genjax-dev/genjax
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[source code]: https://github.com/genjax-dev/genjax-chi
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[documentation]: https://genjax.gen.dev
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[issue tracker]: https://github.com/genjax-dev/genjax/issues
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[issue tracker]: https://github.com/genjax-dev/genjax-chi/issues
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## How to report a bug
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@@ -100,7 +100,7 @@ Feel free to submit early, though—we can always iterate on this.
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It is recommended to open an issue before starting work on anything.
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This will allow a chance to talk it over with the owners and validate your approach.
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[pull request]: https://github.com/genjax-dev/genjax/pulls
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[pull request]: https://github.com/genjax-dev/genjax-chi/pulls
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<!-- github-only -->
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README.md

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<div align="center">
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[![PyPI](https://img.shields.io/pypi/v/genjax)](https://pypi.org/project/GenJAX/)
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[![codecov](https://codecov.io/gh/genjax-dev/genjax/graph/badge.svg?token=OlfTXjcrEW)](https://codecov.io/gh/genjax-dev/genjax)
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[![codecov](https://codecov.io/gh/genjax-dev/genjax-chi/graph/badge.svg?token=OlfTXjcrEW)](https://codecov.io/gh/genjax-dev/genjax-chi)
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[![][jax_badge]](https://github.com/google/jax)
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[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
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[![Public API: beartyped](https://raw.githubusercontent.com/beartype/beartype-assets/main/badge/bear-ified.svg?style=flat-square)](https://beartype.readthedocs.io)
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Created and maintained by the <a href="http://probcomp.csail.mit.edu/">MIT Probabilistic Computing Project</a>. All code is licensed under the <a href="LICENSE">Apache 2.0 License</a>.
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</div>
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[actions]: https://github.com/genjax-dev/genjax/actions
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[actions]: https://github.com/genjax-dev/genjax-chi/actions
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[adev]: https://arxiv.org/abs/2212.06386
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[cookbook]: https://genjax.gen.dev/cookbook/
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[coverage_badge]: https://github.com/genjax-dev/genjax/coverage.svg
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[coverage_badge]: https://github.com/genjax-dev/genjax-chi/coverage.svg
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[discord-url]: https://discord.gg/UTJj3zmJYb
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[discord]: https://img.shields.io/discord/1331245195618029631?style=flat-square&colorA=000000&colorB=000000&label=&logo=discord
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[effect_handling_interp]: https://colab.research.google.com/drive/1HGs59anVC2AOsmt7C4v8yD6v8gZSJGm6#scrollTo=ukjVJ2Ls_6Q3
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[equinox]: https://github.com/patrick-kidger/equinox
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[gen_jl]: https://github.com/probcomp/Gen.jl
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[gen_sp]: https://github.com/probcomp/GenSP.jl
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[jax_badge]: https://img.shields.io/badge/JAX-Accelerated-9cf.svg?style=flat-square&logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAC0AAAAaCAYAAAAjZdWPAAAIx0lEQVR42rWWBVQbWxOAkefur%2B7u3les7u7F3ZIQ3N2tbng8aXFC0uAuKf2hmlJ3AapIgobMv7t0w%2Ba50JzzJdlhlvNldubeq%2FY%2BXrTS1z%2B6sttrKfQOOY4ns13ecFImb47pVvIkukNe4y3Junr1kSZ%2Bb3Na248tx7rKiHlPo6Ryse%2F11NKQuk%2FV3tfL52yHtXm8TGYS1wk4J093wrPQPngRJH9HH1x2fAjMhcIeIaXKQCmd2Gn7IqSvG83BueT0CMkTyESUqm3vRRggTdOBIb1HFDaNl8Gdg91AFGkO7QXe8gJInpoDjEXC9gbhtWH3rjZ%2F9yK6t42Y9zyiC1iLhZA8JQe4eqKXklrJF0MqfPv2bc2wzPZjpnEyMEVlEZCKQzYCJhE8QEtIL1RaXEVFEGmEaTn96VuLDzWflLFbgvqUec3BPVBmeBnNwUiakq1I31UcPaTSR8%2B1LnditsscaB2A48K6D9SoZDD2O6bELvA0JGhl4zIYZzcWtD%2BMfdvdHNsDOHciXwBPN18lj7sy79qQCTNK3nxBZXakqbZFO2jHskA7zBs%2BJhmDmr0RhoadIZjYxKIVHpCZngPMZUKoQKrfEoz1PfZZdKAe2CvP4XnYE8k2LLMdMumwrLaNlomyVqK0UdwN%2BD7AAz73dYBpPg6gPiCN8TXFHCI2s7AWYesJgTabD%2FS5uXDTuwVaAvvghncTdk1DYGkL0daAs%2BsLiutLrn0%2BRMNXpunC7mgkCpshfbw4OhrUvMkYo%2F0c4XtHS1waY4mlG6To8oG1TKjs78xV5fAkSgqcZSL0GoszfxEAW0fUludRNWlIhGsljzVjctr8rJOkCpskKaDYIlgkVoCmF0kp%2FbW%2FU%2F%2B8QNdXPztbAc4kFxIEmNGwKuI9y5gnBMH%2BakiZxlfGaLP48kyj4qPFkeIPh0Q6lt861zZF%2BgBpDcAxT3gEOjGxMDLQRSn9XaDzPWdOstkEN7uez6jmgLOYilR7NkFwLh%2B4G0SQMnMwRp8jaCrwEs8eEmFW2VsNd07HQdP4TgWxNTYcFcKHPhRYFOWLfJJBE5FefTQsWiKRaOw6FBr6ob1RP3EoqdbHsWFDwAYvaVI28DaK8AHs51tU%2BA3Z8CUXvZ1jnSR7SRS2SnwKw4O8B1rCjwrjgt1gSrjXnWhBxjD0Hidm4vfj3e3riUP5PcUCYlZxsYFDK41XnLlUANwVeeILFde%2BGKLhk3zgyZNeQjcSHPMEKSyPPQKfIcKfIqCf8yN95MGZZ1bj98WJ%2BOorQzxsPqcYdX9orw8420jBQNfJVVmTOStEUqFz5dq%2F2tHUY3LbjMh0qYxCwCGxRep8%2FK4ZnldzuUkjJLPDhkzrUFBoHYBjk3odtNMYoJVGx9BG2JTNVehksmRaGUwMbYQITk3Xw9gOxbNoGaA8RWjwuQdsXdGvpdty7Su2%2Fqn0qbzWsXYp0nqVpet0O6zzugva1MZHUdwHk9G8aH7raHua9AIxzzjxDaw4w4cpvEQlM84kwdI0hkpsPpcOtUeaVM8hQT2Qtb4ckUbaYw4fXzGAqSVEd8CGpqamj%2F9Q2pPX7miW0NlHlDE81AxLSI2wyK6xf6vfrcgEwb0PAtPaHM1%2BNXzGXAlMRcUIrMpiE6%2Bxv0cyxSrC6FmjzvkWJE3OxpY%2BzmpsANFBxK6RuIJvXe7bUHNd4zfCwvPPh9unSO%2BbIL2JY53QDqvdbsEi2%2BuwEEHPsfFRdOqjHcjTaCLmWdBewtKzHEwKZynSGgtTaSqx7dwMeBLRhR1LETDhu76vgTFfMLi8zc8F7hoRPpAYjAWCp0Jy5dzfSEfltGU6M9oVCIATnPoGKImDUJNfK0JS37QTc9yY7eDKzIX5wR4wN8RTya4jETAvZDCmFeEPwhNXoOlQt5JnRzqhxLZBpY%2BT5mZD3M4MfLnDW6U%2Fy6jkaDXtysDm8vjxY%2FXYnLebkelXaQtSSge2IhBj9kjMLF41duDUNRiDLHEzfaigsoxRzWG6B0kZ2%2BoRA3dD2lRa44ZrM%2FBW5ANziVApGLaKCYucXOCEdhoew5Y%2Btu65VwJqxUC1j4lav6UwpIJfnRswQUIMawPSr2LGp6WwLDYJ2TwoMNbf6Tdni%2FEuNvAdEvuUZAwFERLVXg7pg9xt1djZgqV7DmuHFGQI9Sje2A9dR%2FFDd0osztIRYnln1hdW1dff%2B1gtNLN1u0ViZy9BBlu%2BzBNUK%2BrIaP9Nla2TG%2BETHwq2kXzmS4XxXmSVan9KMYUprrbgFJqCndyIw9fgdh8dMvzIiW0sngbxoGlniN6LffruTEIGE9khBw5T2FDmWlTYqrnEPa7aF%2FYYcPYiUE48Ul5jhP82tj%2FiESyJilCeLdQRpod6No3xJNNHeZBpOBsiAzm5rg2dBZYSyH9Hob0EOFqqh3vWOuHbFR5eXcORp4OzwTUA4rUzVfJ4q%2FIa1GzCrzjOMxQr5uqLAWUOwgaHOphrgF0r2epYh%2FytdjBmUAurfM6CxruT3Ee%2BDv2%2FHAwK4RUIPskqK%2Fw4%2FR1F1bWfHjbNiXcYl6RwGJcMOMdXZaEVxCutSN1SGLMx3JfzCdlU8THZFFC%2BJJuB2964wSGdmq3I2FEcpWYVfHm4jmXd%2BRn7agFn9oFaWGYhBmJs5v5a0LZUjc3Sr4Ep%2FmFYlX8OdLlFYidM%2B731v7Ly4lfu85l3SSMTAcd5Bg2Sl%2FIHBm3RuacVx%2BrHpFcWjxztavOcOBcTnUhwekkGlsfWEt2%2FkHflB7WqKomGvs9F62l7a%2BRKQQQtRBD9VIlZiLEfRBRfQEmDb32cFQcSjznUP3um%2FkcbV%2BjmNEvqhOQuonjoQh7QF%2BbK811rduN5G6ICLD%2BnmPbi0ur2hrDLKhQYiwRdQrvKjcp%2F%2BL%2BnTz%2Fa4FgvmakvluPMMxbL15Dq5MTYAhOxXM%2FmvEpsoWmtfP9RxnkAIAr%2F5pVxqPxH93msKodRSXIct2l0OU0%2FL4eY506L%2B3GyJ6UMEZfjjCDbysNcWWmFweJP0Jz%2FA0g2gk80pGkYAAAAAElFTkSuQmCC
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[main_build_action_badge]: https://github.com/genjax-dev/genjax/actions/workflows/ci.yml/badge.svg?style=flat-square&branch=main
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[main_build_status_url]: https://github.com/genjax-dev/genjax/actions/workflows/ci.yml?query=branch%3Amain
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[main_build_action_badge]: https://github.com/genjax-dev/genjax-chi/actions/workflows/ci.yml/badge.svg?style=flat-square&branch=main
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[main_build_status_url]: https://github.com/genjax-dev/genjax-chi/actions/workflows/ci.yml?query=branch%3Amain
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[marco_thesis]: https://www.mct.dev/assets/mct-thesis.pdf
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[oryx]: https://github.com/jax-ml/oryx
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[ravi]: https://arxiv.org/abs/2203.02836

docs/contributing.md

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- [Code of Conduct]
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[apache 2.0 license]: https://opensource.org/licenses/Apache-2.0
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[source code]: https://github.com/genjax-dev/genjax
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[source code]: https://github.com/genjax-dev/genjax-chi
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[documentation]: https://genjax.gen.dev
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[issue tracker]: https://github.com/genjax-dev/genjax/issues
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[issue tracker]: https://github.com/genjax-dev/genjax-chi/issues
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## How to report a bug
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It is recommended to open an issue before starting work on anything.
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This will allow a chance to talk it over with the owners and validate your approach.
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[pull request]: https://github.com/genjax-dev/genjax/pulls
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[pull request]: https://github.com/genjax-dev/genjax-chi/pulls

docs/developing.md

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conda activate genjax-py311
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pip install nox
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git clone https://github.com/genjax-dev/genjax-chi
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Published GenJAX artifacts live [on PyPI](https://pypi.org/project/genjax/) and
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are published automatically by GitHub with each new
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[release](https://github.com/genjax-dev/genjax/releases).
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[release](https://github.com/genjax-dev/genjax-chi/releases).
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### Release checklist
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### Releasing via GitHub
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- Visit https://github.com/genjax-dev/genjax/releases/new to create a new release.
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- Visit https://github.com/genjax-dev/genjax-chi/releases/new to create a new release.
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- From the "Choose a tag" dropdown, type the new version (using the format
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docs/index.md

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Created and maintained by the <a href="http://probcomp.csail.mit.edu/">MIT Probabilistic Computing Project</a>. All code is licensed under the <a href="LICENSE">Apache 2.0 License</a>.
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</div>
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[actions]: https://github.com/genjax-dev/genjax/actions
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[actions]: https://github.com/genjax-dev/genjax-chi/actions
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[adev]: https://arxiv.org/abs/2212.06386
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[cookbook]: https://genjax.gen.dev/cookbook/
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[coverage_badge]: https://github.com/genjax-dev/genjax/coverage.svg
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[coverage_badge]: https://github.com/genjax-dev/genjax-chi/coverage.svg
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[effect_handling_interp]: https://colab.research.google.com/drive/1HGs59anVC2AOsmt7C4v8yD6v8gZSJGm6#scrollTo=ukjVJ2Ls_6Q3
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[equinox]: https://github.com/patrick-kidger/equinox
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[gen_jl]: https://github.com/probcomp/Gen.jl
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[gen_sp]: https://github.com/probcomp/GenSP.jl
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[jax_badge]: https://img.shields.io/badge/JAX-Accelerated-9cf.svg?style=flat-square&logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAC0AAAAaCAYAAAAjZdWPAAAIx0lEQVR42rWWBVQbWxOAkefur%2B7u3les7u7F3ZIQ3N2tbng8aXFC0uAuKf2hmlJ3AapIgobMv7t0w%2Ba50JzzJdlhlvNldubeq%2FY%2BXrTS1z%2B6sttrKfQOOY4ns13ecFImb47pVvIkukNe4y3Junr1kSZ%2Bb3Na248tx7rKiHlPo6Ryse%2F11NKQuk%2FV3tfL52yHtXm8TGYS1wk4J093wrPQPngRJH9HH1x2fAjMhcIeIaXKQCmd2Gn7IqSvG83BueT0CMkTyESUqm3vRRggTdOBIb1HFDaNl8Gdg91AFGkO7QXe8gJInpoDjEXC9gbhtWH3rjZ%2F9yK6t42Y9zyiC1iLhZA8JQe4eqKXklrJF0MqfPv2bc2wzPZjpnEyMEVlEZCKQzYCJhE8QEtIL1RaXEVFEGmEaTn96VuLDzWflLFbgvqUec3BPVBmeBnNwUiakq1I31UcPaTSR8%2B1LnditsscaB2A48K6D9SoZDD2O6bELvA0JGhl4zIYZzcWtD%2BMfdvdHNsDOHciXwBPN18lj7sy79qQCTNK3nxBZXakqbZFO2jHskA7zBs%2BJhmDmr0RhoadIZjYxKIVHpCZngPMZUKoQKrfEoz1PfZZdKAe2CvP4XnYE8k2LLMdMumwrLaNlomyVqK0UdwN%2BD7AAz73dYBpPg6gPiCN8TXFHCI2s7AWYesJgTabD%2FS5uXDTuwVaAvvghncTdk1DYGkL0daAs%2BsLiutLrn0%2BRMNXpunC7mgkCpshfbw4OhrUvMkYo%2F0c4XtHS1waY4mlG6To8oG1TKjs78xV5fAkSgqcZSL0GoszfxEAW0fUludRNWlIhGsljzVjctr8rJOkCpskKaDYIlgkVoCmF0kp%2FbW%2FU%2F%2B8QNdXPztbAc4kFxIEmNGwKuI9y5gnBMH%2BakiZxlfGaLP48kyj4qPFkeIPh0Q6lt861zZF%2BgBpDcAxT3gEOjGxMDLQRSn9XaDzPWdOstkEN7uez6jmgLOYilR7NkFwLh%2B4G0SQMnMwRp8jaCrwEs8eEmFW2VsNd07HQdP4TgWxNTYcFcKHPhRYFOWLfJJBE5FefTQsWiKRaOw6FBr6ob1RP3EoqdbHsWFDwAYvaVI28DaK8AHs51tU%2BA3Z8CUXvZ1jnSR7SRS2SnwKw4O8B1rCjwrjgt1gSrjXnWhBxjD0Hidm4vfj3e3riUP5PcUCYlZxsYFDK41XnLlUANwVeeILFde%2BGKLhk3zgyZNeQjcSHPMEKSyPPQKfIcKfIqCf8yN95MGZZ1bj98WJ%2BOorQzxsPqcYdX9orw8420jBQNfJVVmTOStEUqFz5dq%2F2tHUY3LbjMh0qYxCwCGxRep8%2FK4ZnldzuUkjJLPDhkzrUFBoHYBjk3odtNMYoJVGx9BG2JTNVehksmRaGUwMbYQITk3Xw9gOxbNoGaA8RWjwuQdsXdGvpdty7Su2%2Fqn0qbzWsXYp0nqVpet0O6zzugva1MZHUdwHk9G8aH7raHua9AIxzzjxDaw4w4cpvEQlM84kwdI0hkpsPpcOtUeaVM8hQT2Qtb4ckUbaYw4fXzGAqSVEd8CGpqamj%2F9Q2pPX7miW0NlHlDE81AxLSI2wyK6xf6vfrcgEwb0PAtPaHM1%2BNXzGXAlMRcUIrMpiE6%2Bxv0cyxSrC6FmjzvkWJE3OxpY%2BzmpsANFBxK6RuIJvXe7bUHNd4zfCwvPPh9unSO%2BbIL2JY53QDqvdbsEi2%2BuwEEHPsfFRdOqjHcjTaCLmWdBewtKzHEwKZynSGgtTaSqx7dwMeBLRhR1LETDhu76vgTFfMLi8zc8F7hoRPpAYjAWCp0Jy5dzfSEfltGU6M9oVCIATnPoGKImDUJNfK0JS37QTc9yY7eDKzIX5wR4wN8RTya4jETAvZDCmFeEPwhNXoOlQt5JnRzqhxLZBpY%2BT5mZD3M4MfLnDW6U%2Fy6jkaDXtysDm8vjxY%2FXYnLebkelXaQtSSge2IhBj9kjMLF41duDUNRiDLHEzfaigsoxRzWG6B0kZ2%2BoRA3dD2lRa44ZrM%2FBW5ANziVApGLaKCYucXOCEdhoew5Y%2Btu65VwJqxUC1j4lav6UwpIJfnRswQUIMawPSr2LGp6WwLDYJ2TwoMNbf6Tdni%2FEuNvAdEvuUZAwFERLVXg7pg9xt1djZgqV7DmuHFGQI9Sje2A9dR%2FFDd0osztIRYnln1hdW1dff%2B1gtNLN1u0ViZy9BBlu%2BzBNUK%2BrIaP9Nla2TG%2BETHwq2kXzmS4XxXmSVan9KMYUprrbgFJqCndyIw9fgdh8dMvzIiW0sngbxoGlniN6LffruTEIGE9khBw5T2FDmWlTYqrnEPa7aF%2FYYcPYiUE48Ul5jhP82tj%2FiESyJilCeLdQRpod6No3xJNNHeZBpOBsiAzm5rg2dBZYSyH9Hob0EOFqqh3vWOuHbFR5eXcORp4OzwTUA4rUzVfJ4q%2FIa1GzCrzjOMxQr5uqLAWUOwgaHOphrgF0r2epYh%2FytdjBmUAurfM6CxruT3Ee%2BDv2%2FHAwK4RUIPskqK%2Fw4%2FR1F1bWfHjbNiXcYl6RwGJcMOMdXZaEVxCutSN1SGLMx3JfzCdlU8THZFFC%2BJJuB2964wSGdmq3I2FEcpWYVfHm4jmXd%2BRn7agFn9oFaWGYhBmJs5v5a0LZUjc3Sr4Ep%2FmFYlX8OdLlFYidM%2B731v7Ly4lfu85l3SSMTAcd5Bg2Sl%2FIHBm3RuacVx%2BrHpFcWjxztavOcOBcTnUhwekkGlsfWEt2%2FkHflB7WqKomGvs9F62l7a%2BRKQQQtRBD9VIlZiLEfRBRfQEmDb32cFQcSjznUP3um%2FkcbV%2BjmNEvqhOQuonjoQh7QF%2BbK811rduN5G6ICLD%2BnmPbi0ur2hrDLKhQYiwRdQrvKjcp%2F%2BL%2BnTz%2Fa4FgvmakvluPMMxbL15Dq5MTYAhOxXM%2FmvEpsoWmtfP9RxnkAIAr%2F5pVxqPxH93msKodRSXIct2l0OU0%2FL4eY506L%2B3GyJ6UMEZfjjCDbysNcWWmFweJP0Jz%2FA0g2gk80pGkYAAAAAElFTkSuQmCC
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[main_build_action_badge]: https://github.com/genjax-dev/genjax/actions/workflows/ci.yml/badge.svg?style=flat-square&branch=main
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[main_build_status_url]: https://github.com/genjax-dev/genjax/actions/workflows/ci.yml?query=branch%3Amain
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[main_build_action_badge]: https://github.com/genjax-dev/genjax-chi/actions/workflows/ci.yml/badge.svg?style=flat-square&branch=main
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[main_build_status_url]: https://github.com/genjax-dev/genjax-chi/actions/workflows/ci.yml?query=branch%3Amain
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[marco_thesis]: https://www.mct.dev/assets/mct-thesis.pdf
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[oryx]: https://github.com/jax-ml/oryx
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[ravi]: https://arxiv.org/abs/2203.02836

mkdocs.yml

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site_name: GenJAX
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site_url: https://genjax.gen.dev
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repo_url: https://github.com/genjax-dev/genjax
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repo_name: genjax-dev/genjax
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repo_url: https://github.com/genjax-dev/genjax-chi
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repo_name: genjax-dev/genjax-chi
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edit_uri: edit/main/docs/
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copyright: Copyright &copy; 2023 MIT Probabilistic Computing Project
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