run fixing end of file for all files

yhmtsai · yhmtsai · commit f132fb16246b · 2025-01-07T09:22:44.000+01:00
diff --git a/.clang-format b/.clang-format
@@ -121,4 +121,3 @@ Standard:        c++14
 TabWidth:        8
 UseTab:          Never
 ...
-
diff --git a/.github/workflows/spell_check.yml b/.github/workflows/spell_check.yml
@@ -13,4 +13,3 @@ jobs:
       uses: crate-ci/typos@master
       with:
         config: .github/_typos.toml
-
diff --git a/CPackConfig.cmake b/CPackConfig.cmake
@@ -3,4 +3,3 @@ set(CPACK_INSTALL_CMAKE_PROJECTS
     "Debug;Ginkgo;All;/"
     "Release;Ginkgo;All;/"
     )
-
diff --git a/benchmark/test/input.blas.json b/benchmark/test/input.blas.json
@@ -2,4 +2,4 @@
     {
         "n": 100
     }
-]
+]
diff --git a/benchmark/test/input.distributed_mtx.json b/benchmark/test/input.distributed_mtx.json
@@ -4,4 +4,4 @@
         "stencil": "7pt",
         "comm_pattern": "stencil"
     }
-]
+]
diff --git a/benchmark/test/input.distributed_solver.json b/benchmark/test/input.distributed_solver.json
@@ -7,4 +7,4 @@
             "spmv": "csr-csr"
         }
     }
-]
+]
diff --git a/benchmark/test/input.mtx.json b/benchmark/test/input.mtx.json
@@ -3,4 +3,4 @@
         "size": 100,
         "stencil": "7pt"
     }
-]
+]
diff --git a/benchmark/test/input.solver.json b/benchmark/test/input.solver.json
@@ -6,4 +6,4 @@
             "spmv": "csr"
         }
     }
-]
+]
diff --git a/benchmark/tools/compare_test_input1.json b/benchmark/tools/compare_test_input1.json
@@ -45,4 +45,4 @@
             "spmv": "coo"
         }
     }
-]
+]
diff --git a/benchmark/tools/compare_test_input2.json b/benchmark/tools/compare_test_input2.json
@@ -45,4 +45,4 @@
             "spmv": "coo"
         }
     }
-]
+]
diff --git a/benchmark/tools/compare_test_input3.json b/benchmark/tools/compare_test_input3.json
@@ -36,4 +36,4 @@
             }
         }
     }
-]
+]
diff --git a/cmake/hip_helpers.cmake b/cmake/hip_helpers.cmake
@@ -40,4 +40,3 @@ function(ginkgo_check_hip_detection_issue)
         endif ()
     endif ()
 endfunction()
-
diff --git a/dev_tools/oneapi/working_directory/.clang-format b/dev_tools/oneapi/working_directory/.clang-format
@@ -105,4 +105,3 @@ Standard:        Cpp11
 TabWidth:        8
 UseTab:          Never
 ...
-
diff --git a/doc/joss/paper.bib b/doc/joss/paper.bib
@@ -308,7 +308,3 @@ @misc{eigen
   howpublished = {http://eigen.tuxfamily.org},
   year = {2010}
  }
-
-
-
-
diff --git a/doc/pages/BASE_DOC.md b/doc/pages/BASE_DOC.md
@@ -9,4 +9,3 @@ The Ginkgo library can be grouped into [modules](modules.html) and these modules
     * @ref mat_formats : Perform a sparse matrix vector multiplication with a particular matrix format.
 *   @ref log : Monitor your code execution.
 *   @ref stop : Manage your iteration stopping criteria.
-
diff --git a/doc/pages/USR_DOC.md b/doc/pages/USR_DOC.md
@@ -1,2 +1 @@
 This is the main page for the Ginkgo library user documentation. The repository is hosted on [github](https://github.com/ginkgo-project/ginkgo). Documentation on aspects such as the build system, can be found at the @ref install_ginkgo page. The @ref Examples can help you get started with using Ginkgo. 
-
diff --git a/doc/scripts/program2html b/doc/scripts/program2html
@@ -97,4 +97,3 @@ do {
 if ($state == $program_mode) {
    print "</code></pre>\n";
 }
-
diff --git a/doc/scripts/program2plain b/doc/scripts/program2plain
@@ -30,4 +30,3 @@ while (<>) {
     # Otherwise print the line
     print;
 }	
-
diff --git a/doc/scripts/validate-xrefs.pl b/doc/scripts/validate-xrefs.pl
@@ -155,4 +155,3 @@
 	}
    }
 }
-
diff --git a/examples/adaptiveprecision-blockjacobi/doc/intro.dox b/examples/adaptiveprecision-blockjacobi/doc/intro.dox
@@ -7,4 +7,3 @@ right-hand side and an initial guess. The preconditioned CG solver is enhanced
 with a block-Jacobi preconditioner that optimizes the storage format for the 
 distinct inverted diagonal blocks to the numerical requirements. The example
 features the iteration count and runtime of the CG solver.</h3>
-
diff --git a/examples/cb-gmres/doc/builds-on b/examples/cb-gmres/doc/builds-on
@@ -1 +0,0 @@
-
diff --git a/examples/custom-logger/doc/tooltip b/examples/custom-logger/doc/tooltip
@@ -1 +1 @@
-Creating a custom logger with Ginkgo.
+Creating a custom logger with Ginkgo.
diff --git a/examples/custom-matrix-format/doc/intro.dox b/examples/custom-matrix-format/doc/intro.dox
@@ -42,4 +42,3 @@ The intention of this example is to show how a custom linear operator can be
 created and integrated into Ginkgo to achieve performance benefits.
 
 <h3> About the example </h3>
-
diff --git a/examples/custom-stopping-criterion/doc/intro.dox b/examples/custom-stopping-criterion/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>Introduction</h1>
 
 <h3> About the example </h3>
-
diff --git a/examples/custom-stopping-criterion/doc/kind b/examples/custom-stopping-criterion/doc/kind
@@ -1 +1 @@
-stopping-criteria 
+stopping-criteria 
diff --git a/examples/external-lib-interfacing/doc/builds-on b/examples/external-lib-interfacing/doc/builds-on
@@ -1 +0,0 @@
-
diff --git a/examples/external-lib-interfacing/doc/intro.dox b/examples/external-lib-interfacing/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>Introduction</h1>
 
 <h3> About the example </h3>
-
diff --git a/examples/file-config-solver/doc/intro.dox b/examples/file-config-solver/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>This example shows how to use file to configure solver.</h1>
 
 <h3>In this example, we first read in a matrix from a file. Then we read the config file to configure the solver. The example application reports the generation and run time of the solver.</h3>
-
diff --git a/examples/ginkgo-overhead/doc/builds-on b/examples/ginkgo-overhead/doc/builds-on
@@ -1 +0,0 @@
-
diff --git a/examples/ginkgo-overhead/doc/intro.dox b/examples/ginkgo-overhead/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>Introduction</h1>
 
 <h3> About the example </h3>
-
diff --git a/examples/ginkgo-ranges/doc/builds-on b/examples/ginkgo-ranges/doc/builds-on
@@ -1 +0,0 @@
-
diff --git a/examples/ginkgo-ranges/doc/intro.dox b/examples/ginkgo-ranges/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>Introduction</h1>
 
 <h3> About the example </h3>
-
diff --git a/examples/heat-equation/doc/intro.dox b/examples/heat-equation/doc/intro.dox
@@ -37,4 +37,4 @@ The intention of this example is to provide a mini-app showing matrix assembly,
 vector initialization, solver setup and the use of Ginkgo in a more complex
 setting.
 
-<h3> About the example </h3>
+<h3> About the example </h3>
diff --git a/examples/inverse-iteration/doc/intro.dox b/examples/inverse-iteration/doc/intro.dox
@@ -19,4 +19,3 @@ for i = 0 .. max_iterations:
 @endcode
 
 <h3> About the example </h3>
-
diff --git a/examples/kokkos-assembly/doc/intro.dox b/examples/kokkos-assembly/doc/intro.dox
@@ -20,4 +20,3 @@ This example show how to use Ginkgo data with Kokkos kernels.
 If this example is built as part of Ginkgo, it is advised to configure Ginkgo with
 `-DGINKGO_WITH_CCACHE=OFF` to prevent incompabilities with Kokkos' compiler wrapper
 for `nvcc`.
-
diff --git a/examples/minimal-cuda-solver/doc/intro.dox b/examples/minimal-cuda-solver/doc/intro.dox
@@ -14,4 +14,3 @@ and pipe the result to the minimal_solver_cuda executable:
 @code{.cpp}cat data/A.mtx data/b.mtx data/x0.mtx | ./minimal-cuda-solver@endcode
 
 <h3> About the example </h3>
-
diff --git a/examples/mixed-multigrid-preconditioned-solver/doc/intro.dox b/examples/mixed-multigrid-preconditioned-solver/doc/intro.dox
@@ -3,4 +3,3 @@
 
 <h3> In this example, we first read in a matrix from a file. The preconditioned CG solver is enhanced
 with a mixed-precision multigrid preconditioner. The example features the generating time and runtime of the CG solver.</h3>
-
diff --git a/examples/mixed-multigrid-solver/doc/intro.dox b/examples/mixed-multigrid-solver/doc/intro.dox
@@ -4,4 +4,3 @@
 <h3> In this example, we first read in a matrix from a file, then generate a
 right-hand side and an initial guess. The multigrid solver can mix different precision of MultigridLevel. The example
 features the generating time and runtime of the multigrid solver.</h3>
-
diff --git a/examples/mixed-spmv/doc/builds-on b/examples/mixed-spmv/doc/builds-on
@@ -1 +0,0 @@
-
diff --git a/examples/multigrid-preconditioned-solver-customized/doc/intro.dox b/examples/multigrid-preconditioned-solver-customized/doc/intro.dox
@@ -4,4 +4,3 @@
 <h3> In this example, we first read in a matrix from a file. The preconditioned CG solver is enhanced
 with a multigrid preconditioner. Several non-default options are used to create this preconditioner.
 The example features the generating time and runtime of the CG solver.</h3>
-
diff --git a/examples/multigrid-preconditioned-solver/doc/intro.dox b/examples/multigrid-preconditioned-solver/doc/intro.dox
@@ -3,4 +3,3 @@
 
 <h3> In this example, we first read in a matrix from a file. The preconditioned CG solver is enhanced
 with a multigrid preconditioner. The example features the generating time and runtime of the CG solver.</h3>
-
diff --git a/examples/nine-pt-stencil-solver/doc/builds-on b/examples/nine-pt-stencil-solver/doc/builds-on
@@ -1 +1 @@
-simple-solver three-pt-stencil-solver poisson-solver 
+simple-solver three-pt-stencil-solver poisson-solver 
diff --git a/examples/nine-pt-stencil-solver/doc/intro.dox b/examples/nine-pt-stencil-solver/doc/intro.dox
@@ -43,4 +43,3 @@ The intention of this is to show how generation of stencil values and the right
 hand side vector changes when increasing the dimension.
 
 <h3> About the example </h3>
-
diff --git a/examples/papi-logging/doc/intro.dox b/examples/papi-logging/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>Introduction</h1>
 
 <h3> About the example </h3>
-
diff --git a/examples/par-ilu-convergence/doc/intro.dox b/examples/par-ilu-convergence/doc/intro.dox
@@ -4,4 +4,4 @@
 <h3> About the example </h3>
 
 This example can be used to inspect the convergence behavior of parallel
-incomplete factorizations.
+incomplete factorizations.
diff --git a/examples/poisson-solver/doc/intro.dox b/examples/poisson-solver/doc/intro.dox
@@ -43,4 +43,3 @@ application solving a real-world problem, which includes a solution of a large,
 sparse linear system as a component.
 
 <h3> About the example </h3>
-
diff --git a/examples/preconditioned-solver/doc/intro.dox b/examples/preconditioned-solver/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>Introduction</h1>
 
 <h3> About the example </h3>
-
diff --git a/examples/simple-solver-logging/doc/intro.dox b/examples/simple-solver-logging/doc/intro.dox
@@ -2,4 +2,3 @@
 <h1>Introduction</h1>
 
 <h3> About the example </h3>
-
diff --git a/examples/simple-solver/doc/builds-on b/examples/simple-solver/doc/builds-on
@@ -1 +0,0 @@
-
diff --git a/examples/three-pt-stencil-solver/doc/intro.dox b/examples/three-pt-stencil-solver/doc/intro.dox
@@ -46,4 +46,3 @@ use Ginkgo, and the only part where Ginkgo is introduced is inside the
 `solve_system` function.
 
 <h3> About the example </h3>
-
diff --git a/matrices/examples/gko_logo_2d.mtx b/matrices/examples/gko_logo_2d.mtx
@@ -65535,4 +65535,4 @@
 0.0
 0.0
 0.0
-0.0
+0.0
diff --git a/reference/get_info.cmake b/reference/get_info.cmake
@@ -1 +1 @@
-# nothing to print here
+# nothing to print here
diff --git a/third_party/SuiteSparse/AMD/Include/amd_internal.h b/third_party/SuiteSparse/AMD/Include/amd_internal.h
@@ -199,4 +199,3 @@ void AMD_preprocess
     Int W [ ],
     Int Flag [ ]
 ) ;
-
diff --git a/third_party/SuiteSparse/AMD/Source/amd_l2.c b/third_party/SuiteSparse/AMD/Source/amd_l2.c
@@ -10,4 +10,3 @@
 
 #define DLONG
 #include "amd_2.c"
-
diff --git a/third_party/SuiteSparse/AMD/Source/amd_l_defaults.c b/third_party/SuiteSparse/AMD/Source/amd_l_defaults.c
@@ -11,4 +11,3 @@
 
 #define DLONG
 #include "amd_defaults.c"
-
diff --git a/third_party/SuiteSparse/AMD/Source/amd_l_post_tree.c b/third_party/SuiteSparse/AMD/Source/amd_l_post_tree.c
@@ -10,4 +10,3 @@
 
 #define DLONG
 #include "amd_post_tree.c"
-
diff --git a/third_party/SuiteSparse/AMD/Source/amd_l_postorder.c b/third_party/SuiteSparse/AMD/Source/amd_l_postorder.c
@@ -10,4 +10,3 @@
 
 #define DLONG
 #include "amd_postorder.c"
-
diff --git a/third_party/identify_stream_usage/backtrace.hpp b/third_party/identify_stream_usage/backtrace.hpp
@@ -114,4 +114,4 @@ inline bool check_backtrace(const char* ignore_symbol = nullptr)
 }
 
 
-#endif  // STREAM_USAGE_BACKTRACE_HPP_
+#endif  // STREAM_USAGE_BACKTRACE_HPP_
diff --git a/third_party/identify_stream_usage/test_default_stream_identification.cu b/third_party/identify_stream_usage/test_default_stream_identification.cu
@@ -41,4 +41,4 @@ void test_cudaLaunchKernel()
         "No exception raised for kernel on default stream!");
 }
 
-int main() { test_cudaLaunchKernel(); }
+int main() { test_cudaLaunchKernel(); }
diff --git a/third_party/identify_stream_usage/test_default_stream_identification.hip.cpp b/third_party/identify_stream_usage/test_default_stream_identification.hip.cpp
@@ -43,4 +43,4 @@ void test_hipLaunchKernel()
         "No exception raised for kernel on default stream!");
 }
 
-int main() { test_hipLaunchKernel(); }
+int main() { test_hipLaunchKernel(); }

Original file line number	Diff line number	Diff line change
`@@ -3,4 +3,3 @@ set(CPACK_INSTALL_CMAKE_PROJECTS`
`3`	`3`	`"Debug;Ginkgo;All;/"`
`4`	`4`	`"Release;Ginkgo;All;/"`
`5`	`5`	`)`
`6`		`-`
Original file line number	Diff line number	Diff line change
`@@ -2,4 +2,4 @@`
`2`	`2`	`{`
`3`	`3`	`"n": 100`
`4`	`4`	`}`
`5`		`-]`
	`5`	`+]`
Original file line number	Diff line number	Diff line change
`@@ -4,4 +4,4 @@`
`4`	`4`	`"stencil": "7pt",`
`5`	`5`	`"comm_pattern": "stencil"`
`6`	`6`	`}`
`7`		`-]`
	`7`	`+]`
Original file line number	Diff line number	Diff line change
`@@ -7,4 +7,4 @@`
`7`	`7`	`"spmv": "csr-csr"`
`8`	`8`	`}`
`9`	`9`	`}`
`10`		`-]`
	`10`	`+]`
Original file line number	Diff line number	Diff line change
`@@ -3,4 +3,4 @@`
`3`	`3`	`"size": 100,`
`4`	`4`	`"stencil": "7pt"`
`5`	`5`	`}`
`6`		`-]`
	`6`	`+]`
Original file line number	Diff line number	Diff line change
`@@ -6,4 +6,4 @@`
`6`	`6`	`"spmv": "csr"`
`7`	`7`	`}`
`8`	`8`	`}`
`9`		`-]`
	`9`	`+]`
Original file line number	Diff line number	Diff line change
`@@ -45,4 +45,4 @@`
`45`	`45`	`"spmv": "coo"`
`46`	`46`	`}`
`47`	`47`	`}`
`48`		`-]`
	`48`	`+]`
Original file line number	Diff line number	Diff line change
`@@ -36,4 +36,4 @@`
`36`	`36`	`}`
`37`	`37`	`}`
`38`	`38`	`}`
`39`		`-]`
	`39`	`+]`
Original file line number	Diff line number	Diff line change
`@@ -308,7 +308,3 @@ @misc{eigen`
`308`	`308`	`howpublished = {http://eigen.tuxfamily.org},`
`309`	`309`	`year = {2010}`
`310`	`310`	`}`
`311`		`-`
`312`		`-`
`313`		`-`
`314`		`-`
Original file line number	Diff line number	Diff line change
`@@ -97,4 +97,3 @@ do {`
`97`	`97`	`if ($state == $program_mode) {`
`98`	`98`	`print "</code></pre>\n";`
`99`	`99`	`}`
`100`		`-`