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Merge tag '7.2.beta6' into polynomial/rational-powers
SageMath version 7.2.beta6
2 parents 5bdbd32 + c04fdff commit 88dced3

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‎Makefile

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@@ -91,34 +91,37 @@ test: all
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check: test
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testall: all
94-
$(TESTALL) --optional=all --logfile=logs/testall.log
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$(TESTALL) --optional=sage,optional,external --logfile=logs/testall.log
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testlong: all
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$(TESTALL) --long --logfile=logs/testlong.log
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testalllong: all
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$(TESTALL) --long --optional=all --logfile=logs/testalllong.log
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$(TESTALL) --long --optional=sage,optional,external --logfile=logs/testalllong.log
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ptest: all
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$(PTESTALL) --logfile=logs/ptest.log
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ptestall: all
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$(PTESTALL) --optional=all --logfile=logs/ptestall.log
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$(PTESTALL) --optional=sage,optional,external --logfile=logs/ptestall.log
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ptestlong: all
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$(PTESTALL) --long --logfile=logs/ptestlong.log
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ptestalllong: all
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$(PTESTALL) --long --optional=all --logfile=logs/ptestalllong.log
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$(PTESTALL) --long --optional=sage,optional,external --logfile=logs/ptestalllong.log
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testoptional: all
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$(TESTALL) --optional=sage,optional --logfile=logs/testoptional.log
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testoptional: testall # just an alias
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testoptionallong: all
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$(TESTALL) --long --optional=sage,optional --logfile=logs/testoptionallong.log
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117-
testoptionallong: testalllong # just an alias
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ptestoptional: all
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$(PTESTALL) --optional=sage,optional --logfile=logs/ptestoptional.log
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ptestoptional: ptestall # just an alias
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ptestoptionallong: ptestalllong # just an alias
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ptestoptionallong: all
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$(PTESTALL) --long --optional=sage,optional --logfile=logs/ptestoptionallong.log
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configure: configure.ac src/bin/sage-version.sh m4/*.m4
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./bootstrap -d

‎VERSION.txt

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@@ -1 +1 @@
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Sage version 7.2.beta1, released 2016-03-28
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SageMath version 7.2.beta6, Release Date: 2016-04-28

‎build/pkgs/alabaster/SPKG.txt

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= alabaster =
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== Description ==
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Alabaster is a visually (c)lean, responsive, configurable theme for the Sphinx
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documentation system. It is Python 2+3 compatible.
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It began as a third-party theme, and is still maintained separately, but as of
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Sphinx 1.3, Alabaster is an install-time dependency of Sphinx and is selected
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as the default theme.
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Live examples of this theme can be seen on paramiko.org, fabfile.org and
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pyinvoke.org.

‎build/pkgs/alabaster/checksums.ini

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tarball=alabaster-VERSION.tar.gz
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sha1=ff3e575ee7eb4ba1721f17d91ec5a54b16283603
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md5=957c665d7126dea8121f98038debcba7
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cksum=738605178

‎build/pkgs/alabaster/dependencies

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$(PYTHON) | pip
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----------
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All lines of this file are ignored except the first.
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It is copied by SAGE_ROOT/build/make/install into SAGE_ROOT/build/make/Makefile.

‎build/pkgs/alabaster/package-version.txt

+1
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@@ -0,0 +1 @@
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0.7.7

‎build/pkgs/alabaster/spkg-install

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#!/usr/bin/env bash
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cd src && python setup.py install

‎build/pkgs/alabaster/type

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@@ -0,0 +1 @@
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standard

‎build/pkgs/babel/SPKG.txt

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= babel =
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== Description ==
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Internationalization utilities
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A collection of tools for internationalizing Python applications.

‎build/pkgs/babel/checksums.ini

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tarball=Babel-VERSION.tar.gz
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sha1=e02392bc9a16f7672686bce23e4e3cdadcc1b1c8
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md5=1b69e4b2ab3795119266ccaa36b36f15
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cksum=2897183559

‎build/pkgs/babel/dependencies

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$(PYTHON) | pip pytz
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----------
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All lines of this file are ignored except the first.
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It is copied by SAGE_ROOT/build/make/install into SAGE_ROOT/build/make/Makefile.

‎build/pkgs/babel/package-version.txt

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2.2.0

‎build/pkgs/babel/spkg-install

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#!/usr/bin/env bash
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cd src && python setup.py install

‎build/pkgs/babel/type

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@@ -0,0 +1 @@
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standard

‎build/pkgs/brial/patches/build/cygwin-gnucpp.patch

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--- a/common.mk 2016-04-07 15:53:44.907758600 +0200
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+++ b/common.mk 2016-04-07 15:54:02.599770500 +0200
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@@ -3,6 +3,6 @@
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-I$(top_srcdir)/libpolybori/include
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6+
AM_CFLAGS = -std=c99
7+
-AM_CXXFLAGS = -std=c++98 -ftemplate-depth-100
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+AM_CXXFLAGS = -std=gnu++98 -ftemplate-depth-100
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AM_DEFAULT_SOURCE_EXT = .cc

‎build/pkgs/brial/patches/cygwin-gnucpp.patch

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diff --git a/Cudd/cudd/Makefile.in b/Cudd/cudd/Makefile.in
2+
index 645eb7d..760278b
3+
--- a/Cudd/cudd/Makefile.in
4+
+++ b/Cudd/cudd/Makefile.in
5+
@@ -350,7 +350,7 @@ AM_CPPFLAGS = \
6+
-I$(top_srcdir)/libpolybori/include
7+
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AM_CFLAGS = -std=c99
9+
-AM_CXXFLAGS = -std=c++98 -ftemplate-depth-100
10+
+AM_CXXFLAGS = -std=gnu++98 -ftemplate-depth-100
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AM_DEFAULT_SOURCE_EXT = .cc
12+
noinst_LTLIBRARIES = libcudd.la
13+
libcudd_la_SOURCES = \
14+
diff --git a/common.mk b/common.mk
15+
index 7915587..0afda02 100755
16+
--- a/common.mk
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+++ b/common.mk
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@@ -3,6 +3,6 @@ AM_CPPFLAGS = \
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-I$(top_srcdir)/libpolybori/include
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AM_CFLAGS = -std=c99
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-AM_CXXFLAGS = -std=c++98 -ftemplate-depth-100
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+AM_CXXFLAGS = -std=gnu++98 -ftemplate-depth-100
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AM_DEFAULT_SOURCE_EXT = .cc
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diff --git a/groebner/src/Makefile.in b/groebner/src/Makefile.in
27+
index ef7882c..cb3b04f
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--- a/groebner/src/Makefile.in
29+
+++ b/groebner/src/Makefile.in
30+
@@ -372,7 +372,7 @@ AM_CPPFLAGS = \
31+
-I$(top_srcdir)/libpolybori/include
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AM_CFLAGS = -std=c99
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-AM_CXXFLAGS = -std=c++98 -ftemplate-depth-100
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+AM_CXXFLAGS = -std=gnu++98 -ftemplate-depth-100
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AM_DEFAULT_SOURCE_EXT = .cc
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lib_LTLIBRARIES = libpolybori_groebner.la
38+
libpolybori_groebner_la_CXXFLAGS = $(AM_CXXFLAGS) $(SIMMD_CFLAGS)
39+
diff --git a/libpolybori/src/Makefile.in b/libpolybori/src/Makefile.in
40+
index 4e4e60a..4d110c2
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--- a/libpolybori/src/Makefile.in
42+
+++ b/libpolybori/src/Makefile.in
43+
@@ -323,7 +323,7 @@ AM_CPPFLAGS = \
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-I$(top_srcdir)/libpolybori/include
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AM_CFLAGS = -std=c99
47+
-AM_CXXFLAGS = -std=c++98 -ftemplate-depth-100
48+
+AM_CXXFLAGS = -std=gnu++98 -ftemplate-depth-100
49+
AM_DEFAULT_SOURCE_EXT = .cc
50+
noinst_LTLIBRARIES = libpolybori_base.la
51+
libpolybori_base_la_SOURCES = \

‎build/pkgs/cddlib/spkg-install

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cp ../patches/random.{c,h} lib-src/
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cp ../patches/random.{c,h} lib-src-gmp/
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# Required by sage.geometry.polyhedra
31+
# Required by sage.geometry.polyhedron
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cp ../patches/cdd_both_reps.c src/
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cp ../patches/cdd_both_reps.c src-gmp/cdd_both_reps.c
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‎build/pkgs/configure/checksums.ini

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tarball=configure-VERSION.tar.gz
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sha1=00f5ab1197e8601e949be940e124dc361f50bc08
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md5=b41f8ff2af625beb2f785c5ead20379b
4-
cksum=1655706111
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sha1=dedd72dbd12d4b2d3101616a7946cacd7704046d
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md5=fc0e4afaf65bd5f241380893d5f72d30
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cksum=3500657664

‎build/pkgs/configure/package-version.txt

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154
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‎build/pkgs/csdp/type

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experimental
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optional

‎build/pkgs/cython/checksums.ini

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tarball=Cython-VERSION.tar.gz
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sha1=ee455e4f6bedb8d02325da1d4810ab906c3ddc1d
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md5=66b62989a67c55af016c916da36e7514
4-
cksum=3621634163
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sha1=32f12b8dd976111668ef8ba7e716a850869a0bf6
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md5=14fbc970f4a856845e633cbc09e61048
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cksum=2292891014

‎build/pkgs/cython/package-version.txt

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0.23.5
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0.24.p0

‎build/pkgs/cython/patches/sig_includes.patch

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This file was deleted.

‎build/pkgs/database_gap/checksums.ini

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tarball=database_gap-VERSION.tar.bz2
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sha1=46760a6a606eb1eea55b86f12d429a86c97740d7
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md5=87273df691a15bcf6b4b75b372cb6d0c
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cksum=1428556919
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sha1=30f30b05f83eda0e092002e509b47768862a743f
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md5=b443d7e7852471f83d19dd409b19a221
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cksum=4104886394

‎build/pkgs/database_gap/package-version.txt

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4.7.9
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4.8.3

‎build/pkgs/database_gap/spkg-src

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# Remove old sources and download new
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rm -rf src
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if [ -z "$UPSTREAM_SOURCE_TARBALL" ]; then
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tar xjf <( curl http://www.gap-system.org/pub/gap/gap47/tar.bz2/gap4r7p8_2015_06_09-20_27.tar.bz2)
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tar xf <( curl http://www.gap-system.org/pub/gap/gap47/tar.bz2/gap4r7p8_2015_06_09-20_27.tar.bz2)
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else
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tar xjf "$UPSTREAM_SOURCE_TARBALL"
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tar xf "$UPSTREAM_SOURCE_TARBALL"
1919
fi
20-
GAP=`pwd`/gap4r7
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GAP=`pwd`/gap4r8
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# Make everything writable
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chmod -R u+w "$GAP"

‎build/pkgs/database_mutation_class/SPKG.txt

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= Mutation class database =
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== Description ==
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Contains a database of all exceptional mutation classes of quivers.
6+
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Every file in the database is of the form ``mutation_classes_n.dig6`` for some ``n`` and
8+
- contains a ``cPickle.dump`` of a dictionary where
9+
- the keys are tuples representing irreducible exceptional quiver mutation types of rank ``n``, and
10+
- the values are all quivers in the given mutation class stored in canonical form as ``(dig6,edges)`` where
11+
- ``dig6`` is the dig6 data of the given ``DiGraph``, and
12+
- ``edges`` are the non-simply-laced edges thereof.
13+
- is obtained by running the function
14+
``sage.combinat.cluster_algebra_quiver.quiver_mutation_type._save_data_dig6(n, types='Exceptional', verbose=False)``
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== SPKG Maintainers ==
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* C. Stump <[email protected]>
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== Dependencies ==
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* None
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‎build/pkgs/database_mutation_class/checksums.ini

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tarball=database_mutation_class-VERSION.tar.gz
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sha1=0e7eb2e89e1d4a612cb60e3d6be14d42f3e55678
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md5=8186b8f75eae76825399f3a9e6378c7b
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cksum=364985299

‎build/pkgs/database_mutation_class/dependencies

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# no dependencies

‎build/pkgs/database_mutation_class/package-version.txt

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1.0

‎build/pkgs/database_mutation_class/spkg-install

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#!/usr/bin/env bash
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cd src
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if [ -z "$SAGE_LOCAL" ]; then
6+
echo >&2 "SAGE_LOCAL undefined database_mutation_class-1.0 exiting"
7+
echo >&2 "Maybe run 'sage --sh'?"
8+
exit 1
9+
fi
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mkdir -p $SAGE_SHARE/cluster_algebra_quiver && cp src/* $SAGE_SHARE/cluster_algebra_quiver
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if [ $? -ne 0 ]; then
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echo >&2 "Error: Failed to copy the data to $SAGE_SHARE/cluster_algebra_quiver. database_mutation_class-1.0 exiting"
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exit 1
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fi
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‎build/pkgs/database_mutation_class/type

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optional

‎build/pkgs/flask/SPKG.txt

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= Flask =
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== Description ==
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A microframework based on Werkzeug, Jinja2 and good intentions
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Flask is a microframework for Python based on Werkzeug, Jinja 2 and good
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intentions. And before you ask: It’s BSD licensed!

‎build/pkgs/flask/checksums.ini

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tarball=Flask-VERSION.tar.gz
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sha1=d3d078262b053f4438e2ed3fd6f9b923c2c92172
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md5=378670fe456957eb3c27ddaef60b2b24
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cksum=2901487846

‎build/pkgs/flask/dependencies

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$(PYTHON) | pip werkzeug jinja2 itsdangerous
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----------
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All lines of this file are ignored except the first.
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It is copied by SAGE_ROOT/build/make/install into SAGE_ROOT/build/make/Makefile.

‎build/pkgs/flask/package-version.txt

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0.10.1

‎build/pkgs/flask/spkg-install

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#!/usr/bin/env bash
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cd src && python setup.py install

‎build/pkgs/flask/type

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standard

‎build/pkgs/flask_autoindex/SPKG.txt

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= Flask-AutoIndex =
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== Description ==
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The mod_autoindex for Flask
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Flask-AutoIndex generates an index page for your Flask application
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automatically. The result just like mod_autoindex, but the look is more
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awesome!

‎build/pkgs/flask_autoindex/checksums.ini

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tarball=Flask_AutoIndex-VERSION.tar.gz
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sha1=15e08bd3a516aa327ab4af767a29154a4bebdae3
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md5=24984602365704737468bb4d2586a739
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cksum=1140907747

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