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DESCRIPTION
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Package: serosim
Title: Serosurvey simulation
Version: 0.0.0.9000
Authors@R: c(
person("Arthur", "Menezes", , "[email protected]", role = c("aut", "cre")),
person("James", "Hay", , "[email protected]", role = "aut")
)
Description: serosim is an open source R package designed to aid inference
from serological surveys, by simulating data arising from
user-specified vaccine and infection-generated antibody kinetics
processes using a random effects model. serosim allows users to
specify and adjust model inputs representing underlying processes
responsible for generating the observed titer values like time-varying
patterns of infection and vaccination, population demography, immunity
and antibody kinetics, and serological survey sampling design in order
to best represent the population and disease system(s) of interest.
License: GPL (>= 3)
URL: https://github.com/seroanalytics/serosim,
https://seroanalytics.github.io/serosim/
BugReports: https://github.com/seroanalytics/serosim/issues
Depends:
R (>= 3.5.0)
Imports:
data.table,
deSolve,
dplyr,
ggplot2,
reshape2,
stats,
tidyr,
abind,
foreach,
parallel,
doParallel
Suggests:
bayesplot,
coda,
devtools,
ggpubr,
knitr,
patchwork,
plyr,
remotes,
rmarkdown,
rstan,
testthat (>= 3.0.0),
tidyverse,
viridis
LinkingTo:
Rcpp,
RcppArmadillo,
RcppParallel
Remotes:
epiverse-trace/serofoi,
seroanalytics/serosolver
VignetteBuilder:
knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
Maitainer: Arthur Menezes <[email protected]>
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3