Fix issue #164 (#165, #166)

Author: theseer

src/collector/project/Dependency.php

@@ -12,7 +12,7 @@ class Dependency {
 
         public function __construct(fDOMDocument $dom, Project $project) {
             $this->index = $dom;
-            $this->baseDir = dirname($dom->documentURI);
+            $this->baseDir = dirname(urldecode($dom->documentURI));
             $this->index->registerNamespace('phpdox', 'http://xml.phpdox.net/src');
             $this->project = $project;
         }

src/generator/project/TokenFileIterator.php

@@ -24,8 +24,7 @@ public function __construct(\DOMNodeList $nodeList) {
          */
         public function current() {
             $item = $this->nodeList->item($this->pos);
-            //var_dump($item);
-            $path = dirname($item->ownerDocument->documentURI) . '/' . $item->getAttribute('xml');
+            $path = dirname(urldecode($item->ownerDocument->documentURI)) . '/' . $item->getAttribute('xml');
             return new TokenFile(new FileInfo($path));
         }