DATA_DIR not respected #7
Comments
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Simplest fix I'd recommend is setting As a fix from our side, we could use an env variable or refer to another path. What do you think @edebrouwer, @ExpectationMax, @mi92? |
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@mohit-kumar-27 any updates on this? Does the proposed workaround solve your problem? |
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Hello Bastain, |
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This is how I modified the TOGL/topognn/init.py import os.path class Tasks(Enum): Still the code searches in the wrong directory and gives the following error |
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This is the right way; I think you need to install TOGL again afterwards to
refresh the file in your virtual environment.
…On 22 June 2022 20:10:53 Mohit Kumar ***@***.***> wrote:
This is how I modified the TOGL/topognn/__init__.py
import os.path
from enum import Enum, auto
**DATA_DIR='/home/mohit/TOGL/data/'
#DATA_DIR = os.path.join(os.path.dirname(__file__), '..', 'data')**
class Tasks(Enum):
"""Valid tasks."""
GRAPH_CLASSIFICATION = auto()
NODE_CLASSIFICATION = auto()
NODE_CLASSIFICATION_WEIGHTED = auto()
Still the code searches in the wrong directory and gives the following error
**FileNotFoundError: [Errno 2] No such file or directory:
'/scott/mohit/anaconda3/envs/togl/lib/python3.8/site-packages/topognn/../data/Benchmark_idx/DD_train.index'**
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#7 (comment)
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Hi Bastain, I tried running the code by reinstalling the project and DATA_DIR error was resolved, but now I get the following error I created a new wandb account and gave the api key, when the program asked me to, then I got this error This is the full output wandb: Currently logged in as: mohitk2 (use During handling of the above exception, another exception occurred: Traceback (most recent call last): During handling of the above exception, another exception occurred: Traceback (most recent call last): The above exception was the direct cause of the following exception: Traceback (most recent call last): |
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You can start @ExpectationMax @edebrouwer: should we solve this more generically and remove the team name from the WandB logger? Or potentially default to a tensorboard logger? |
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I ran the following from my terminal (togl) mohit@user-Default-string:~/TOGL$ python topognn/train_model.py --model TopoGNN --dataset DD --batch_size 20 --lr 0.0007 I get the following error: Traceback (most recent call last): File "/scott/mohit/anaconda3/envs/togl/lib/python3.8/site-packages/pytorch_lightning/accelerators/accelerator.py", line 73, in start_training wandb: Waiting for W&B process to finish, PID 11662 Could you suggest what needs to be done here? |
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Seems to be a problem with wandb; please try PS: Please read and follow these instructions for formatting your messages. |
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I tried The issue seems to be with pytorch_lightning and multiprocessing |
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Hmm, might be better to open a separate issue with Closing this issue for now since the original problem has been resolved. Please feel free to open another issue for anything else related to TOGL. |
Hi Bastain!
I tried installing without poetry and running your code.
Everything worked...
I am not able to figure out how to set the DATA_DIR , as the code is looking for the data in the wrong directory.
Here is the output that I get
Originally posted by @mohit-kumar-27 in #6 (comment)
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