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39 Open 17 Closed
39 Open 17 Closed
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Issues list

Move unit test test_hyena_operators to NeMo Evo2
#750 opened Mar 12, 2025 by dorotat-nv
[Feature] Add support for optionally setting lr_max_steps in the learning rate scheduler, enabling training to stop at a specified step using Trainer.max without requiring modifications to the full LR schedule. Evo2
#749 opened Mar 12, 2025 by dorotat-nv
[Feature] Flash attention v3 support
#735 opened Mar 8, 2025 by jstjohn
[BUG] "7b_arc_longcontext" evo2 training unit test on 1 gpu too memory consuming bug Something isn't working
#731 opened Mar 7, 2025 by dorotat-nv
1
Use faster direct call of train/predict methods in test scripts.
#720 opened Mar 5, 2025 by jstjohn
1
Clean up and document scripts in the evo2/utils/ subdirectories. Split out useful functions.
#719 opened Mar 5, 2025 by jstjohn
Split padding logic out of the batch collate function.
#718 opened Mar 5, 2025 by jstjohn
[BUG] /opt/nvidia/nvidia_entrypoint.sh: line 55: /workspace/bionemo2/bin/bash: No such file or directory bug Something isn't working
#711 opened Mar 1, 2025 by TSLQ
[Feature] Inquiry Regarding Multi-Node Training Support in BioNeMo Framework
#700 opened Feb 24, 2025 by hbsun2113
3
[Feature] Add golden value for metric logging in ESM2 finetuning
#684 opened Feb 10, 2025 by sichu2023
@farhadrgh
[BUG] Cannot download artefacts without NGC API KEY bug Something isn't working
#682 opened Feb 7, 2025 by dorotat-nv
1
test DDP parallelism without usage of mock enhancement New feature or request
#680 opened Feb 6, 2025 by dorotat-nv
Allow definition of task heads other than MLP/CNN for ESM2 finetuning
#674 opened Jan 31, 2025 by farhadrgh
1
[BUG] conftest in rendered documentation bug Something isn't working
#667 opened Jan 29, 2025 by pstjohn
AWS Deep Learning AMI not compatible with multi-GPU training of MolMIM bug Something isn't working
#644 opened Jan 23, 2025 by xinyu-dev
Make model weights searchable on NGC bug Something isn't working
#613 opened Jan 16, 2025 by xinyu-dev
1
Add descriptions for the params in the config YAML file of MolMIM enhancement New feature or request
#612 opened Jan 16, 2025 by xinyu-dev
Change default overlap param gather of geneformer to match esm2.
#585 opened Jan 9, 2025 by jstjohn
Installing SCDL raises a missing dependency
#472 opened Nov 23, 2024 by edawson
@polinabinder1
1
Compatibility of model weights trained in newer containers to run in older BioNeMo containers
#454 opened Nov 19, 2024 by xinyu-dev
Enable extraction of gene embeddings from geneformer (averaging of gene embeddings across all cells)
#452 opened Nov 19, 2024 by jstjohn
9
Geneformer + ESM2 train script and pydantic config equivalence check
#403 opened Nov 6, 2024 by jstjohn
@skothenhill-nv
1
Refactor geneformer_mlm_loss_eval script to use a better mechanism for getting the tokenizer.
#402 opened Nov 5, 2024 by jstjohn
Write test for geneformer_mlm_loss_eval script.
#401 opened Nov 5, 2024 by jstjohn
Convert geneformer_mlm_loss_eval script to use pooch for downloads.
#400 opened Nov 5, 2024 by jstjohn
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