The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

1 Line of code data quality profiling & exploratory data analysis for Pandas and Spark DataFrames.

A unifying framework for biomedical research knowledge graphs

Code for "Heterogeneous Graph Transformer" (WWW'20), which is based on pytorch_geometric

My implementation of the original GAT paper (Veličković et al.). I've additionally included the playground.py file for visualizing the Cora dataset, GAT embeddings, an attention mechanism, and entr…

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

An unsupervised scRNA-seq analysis workflow with graph attention networks

Platform for designing and evaluating Graph Neural Networks (GNN)

machine-readable file format for genomic library sequence and structure

End-to-end analysis of spatial multi-omics data

Similarity search in heterogeneous knowledge graphs using meta paths.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data

Visualization of Functional Enrichment Result

High-performance In-browser LLM Inference Engine

MultiMAP for integration of single cell multi-omics

Template for creating a BioCypher-driven knowledge graph

Statistical Rethinking Course for Jan-Mar 2023

MONAI Tutorials

All Algorithms implemented in Python

energy package for R

Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

Metacells - Single-cell RNA Sequencing Analysis

R pkg for Hierarchical Dirichlet Process

The entrance repository of Markdown presentation ecosystem

Gene ontology terms to compare single cell RNA-seq data