Skip to content

Issues: bowang-lab/scGPT

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

136 Open 127 Closed
136 Open 127 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

How to obtain the Atlas for reference mapping with re-pretrained scGPT model?
#300 opened Mar 13, 2025 by ZhengPeng7
pan-cancer model dataset
#299 opened Mar 12, 2025 by thinkCodeai
Concerns about the effectiveness of scGPT perturbation
#298 opened Mar 11, 2025 by YuchengWang2023
Inquiry About Dataset Details in scGPT Study - Shuang Ge
#297 opened Mar 10, 2025 by geshuang307
About "model.load_state_dict(model_dict)"
#296 opened Mar 10, 2025 by choonlog
About GPU memory usage
#295 opened Mar 10, 2025 by choonlog
Gene Vocab Expansion - Pretraining Data
#294 opened Mar 6, 2025 by nc1m
tutorial on creating a foundation model with custom data for pre-training
#293 opened Feb 27, 2025 by TheSingleCell
Question About MSE During Pretraining
#292 opened Feb 26, 2025 by ellieujin
2
scGPT stable at higher max_lengths?
#291 opened Feb 24, 2025 by peterhealx
<cls> row in mask
#290 opened Feb 19, 2025 by clairecheng0906
1
pip install scGPT doesn't work on google colab
#288 opened Feb 18, 2025 by HaukeGS
1
Will scGPT support multi-GPU in data integration?
#287 opened Feb 16, 2025 by wangxuann1995
Updating repo
#286 opened Feb 5, 2025 by DanielFLevine
3
Bad performance on gene value prediction
#285 opened Jan 28, 2025 by Thodorissio
How to use the mvc decoder at test-time?
#283 opened Jan 25, 2025 by syr-cn
1
AttributeError: Can't pickle local object 'get_batch_cell_embeddings..Dataset'
#282 opened Jan 23, 2025 by thinkCodeai
Are Zero-Shot Cell Embeddings Dependent on Input Sample Chunk Size & max_length?
#281 opened Jan 20, 2025 by peterhealx
Installation issue
#279 opened Jan 3, 2025 by zhenlyu
2
poetry install problem - unable to find installation candidates for jaxlib
#278 opened Jan 2, 2025 by amina11
1
High Similarity in Predictions Across Perturbation Conditions
#277 opened Dec 31, 2024 by ellieujin
2
Inquiry on Best Practices for DEG Analysis Using scGPT Model Outputs
#276 opened Dec 31, 2024 by ellieujin
Request for Checkpoints for Each Downstream Task (e.g., Perturbation)
#275 opened Dec 7, 2024 by JunyanReplicant
pre-training using cell prompt
#274 opened Nov 27, 2024 by matsunokentaro
CellXGene census 2024-07-01 NA values?
#273 opened Nov 24, 2024 by rpeys
ProTip! Follow long discussions with comments:>50.