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@epiverse-trace

Epiverse-TRACE

README.md

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 43 4

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 35 12

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 18 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 4

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 13 4

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 12 2

Repositories

Showing 10 of 61 repositories
  • safeframe Public

    Tagging, validating, and safeguarding data to help harden data pipelines.

    epiverse-trace/safeframe’s past year of commit activity
    R 0 0 3 3 Updated Mar 13, 2025
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 1 0 0 0 Updated Mar 13, 2025
  • tutorials-middle Public
    epiverse-trace/tutorials-middle’s past year of commit activity
    R 3 2 64 (2 issues need help) 0 Updated Mar 12, 2025
  • epitkit Public
    epiverse-trace/epitkit’s past year of commit activity
    R 0 2 5 0 Updated Mar 12, 2025
  • tutorials-late Public
    epiverse-trace/tutorials-late’s past year of commit activity
    R 2 1 36 0 Updated Mar 12, 2025
  • simulist Public

    An R package for simulating line lists

    epiverse-trace/simulist’s past year of commit activity
    R 9 1 9 4 Updated Mar 12, 2025
  • cleanepi Public

    R package to clean and standardize epidemiological data

    epiverse-trace/cleanepi’s past year of commit activity
    R 9 3 14 5 Updated Mar 12, 2025
  • epichains Public

    Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

    epiverse-trace/epichains’s past year of commit activity
    R 7 2 25 (3 issues need help) 2 Updated Mar 12, 2025
  • packagetemplate Public template

    Template of an R package with standard Epiverse-TRACE automation

    epiverse-trace/packagetemplate’s past year of commit activity
    R 7 4 13 (2 issues need help) 2 Updated Mar 12, 2025
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 3 3 10 (1 issue needs help) 4 Updated Mar 12, 2025
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