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mskilab-org

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  1. JaBbA JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 56 26

  2. gGnome gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 39 21

  3. fishHook fishHook Public

    R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

    R 28 9

  4. gGnome.js gGnome.js Public

    JavaScript 26 5

  5. gTrack gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    R 16 12

  6. dryclean dryclean Public

    Irons out wrinkles in noisy coverage data using robust PCA

    R 13 14

Repositories

Showing 10 of 37 repositories
  • gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    mskilab-org/gGnome’s past year of commit activity
    R 39 MIT 21 5 10 Updated Mar 19, 2025
  • skilift Public

    An R interface for loading and modifying PGV datafiles

    mskilab-org/skilift’s past year of commit activity
    R 0 3 4 1 Updated Mar 18, 2025
  • ffTrack Public

    GenomicRanges based R class for fast, out-of-core memory access and storage of numeric and character data that is a function of genomic position.

    mskilab-org/ffTrack’s past year of commit activity
    R 0 MIT 0 1 1 Updated Mar 17, 2025
  • nf-gos Public

    End to end cancer genomics pipeline

    mskilab-org/nf-gos’s past year of commit activity
    Nextflow 1 MIT 2 10 0 Updated Mar 17, 2025
  • gOS Public

    Genomic case report

    mskilab-org/gOS’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 8 0 Updated Mar 17, 2025
  • onenesstwoness Public

    Random forest classifier for BRCA1/BRCA2 deletion phenotype classification

    mskilab-org/onenesstwoness’s past year of commit activity
    R 0 0 0 0 Updated Mar 13, 2025
  • GxG Public

    Scalable GenomicRanges based class for storing, manipulating, and querying genomic matrices and pairwise features.

    mskilab-org/GxG’s past year of commit activity
    R 7 MIT 7 1 0 Updated Mar 12, 2025
  • JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    mskilab-org/JaBbA’s past year of commit activity
    R 56 MIT 26 14 1 Updated Mar 11, 2025
  • multiplicity Public
    mskilab-org/multiplicity’s past year of commit activity
    R 1 1 0 0 Updated Mar 10, 2025
  • gUtils Public

    Utility functions to extend and optimize GenomicRanges functionality.

    mskilab-org/gUtils’s past year of commit activity
    R 9 GPL-2.0 11 6 3 Updated Mar 6, 2025

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