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Pull requests: nf-core/modules

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Pull requests list

Allow for gziped reference files in gatk4/variantfiltration
#7790 opened Mar 13, 2025 by zachary-foster Loading…
12 of 17 tasks
Update tabix/bgzip to make index file parameter detection more robust
#7789 opened Mar 13, 2025 by zachary-foster Loading…
12 of 17 tasks
Add new module busco/download
#7788 opened Mar 12, 2025 by zachary-foster Loading…
12 of 17 tasks
Add extra_args to modules meta-schema.json
#7783 opened Mar 12, 2025 by mirpedrol Loading…
1
Add single copy sequence file output to busco/busco
#7779 opened Mar 12, 2025 by zachary-foster Loading…
Add estimated depth output to bbmap/sendsketch
#7777 opened Mar 11, 2025 by zachary-foster Loading…
4
basicpy nf-test
#7772 opened Mar 11, 2025 by kbestak Loading…
2 of 17 tasks
1
21
add nf-test and stub to svtk/standardize
#7768 opened Mar 10, 2025 by kubranarci Loading…
17 tasks
1
Clair3
#7765 opened Mar 10, 2025 by robert-a-forsyth Loading…
12 of 17 tasks
3
Add dream module
#7750 opened Mar 6, 2025 by nschcolnicov Loading…
17 tasks
1
2
ci: Try running on arm
#7747 opened Mar 5, 2025 by edmundmiller • Draft
@edmundmiller
3
[DO NOT MERGE] Test gpu runners
#7521 opened Feb 27, 2025 by mashehu • Draft
2
bioformats2raw module
#7518 opened Feb 26, 2025 by CaroAMN Loading…
8 of 9 tasks
1
7
new module: FASTQDL
#7506 opened Feb 20, 2025 by camlloyd Loading…
11 of 17 tasks
1
21
gatk4/markduplicates - pipe uncompressed output to speed up CRAM writing
#7497 opened Feb 18, 2025 by pontushojer • Draft
11 of 17 tasks
4
simplify assertion for stable files in a folder
#7462 opened Feb 10, 2025 by maxulysse • Draft
17 tasks
7
Rattle cluster awaiting-changes will be closed after 30 days
#7447 opened Feb 6, 2025 by chriswyatt1 Loading…
3
New samtools/bgzip module to produce BGZF-compressed files.
#7433 opened Feb 5, 2025 by charles-plessy • Draft
17 tasks done
5
Add db to output meta object for diamond/blastp
#7403 opened Jan 30, 2025 by erikrikarddaniel Loading…
2 of 17 tasks
7
Hifiadapterfilt
#7398 opened Jan 30, 2025 by Ge94 Loading…
14 of 17 tasks
1
11
Fix falco sample names
#7394 opened Jan 30, 2025 by MartinGrignard Loading…
11
index should be emitted as either tbi or csi awaiting-changes will be closed after 30 days
#7385 opened Jan 28, 2025 by tkchafin Loading…
17 tasks
3
Add whitelist parameter to kb module
#7369 opened Jan 26, 2025 by nictru Loading…
3
Update pb deepvariant
#7363 opened Jan 24, 2025 by blajoie Loading…
4 of 16 tasks
11
Update pb fq2bam
#7357 opened Jan 23, 2025 by gburnett-nvidia Loading…
2 of 17 tasks
17
ProTip! What’s not been updated in a month: updated:<2025-02-13.