ENH: Support spatial normalization to alternative modalities #459
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mgxd
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effigies
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Dec 11, 2024
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## master #459 +/- ##
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+ Coverage 63.15% 74.16% +11.00%
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Files 25 25
Lines 1938 1947 +9
Branches 240 242 +2
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+ Hits 1224 1444 +220
+ Misses 676 438 -238
- Partials 38 65 +27
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effigies
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@mgxd This is passing our tests, and I'm confident it won't break non-nibabies use cases. Merge when you're comfortable. |
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0.17.0 (December 19, 2024)
New feature release in the 0.17.x series.
This release improves handling of datasets where T1w images are not
the primary modality. It also supports the generation of fsLR meshes
on the subject surface with the names:
sub-<label>/anat/sub-<label>_hemi-<L|R>_space-fsLR_den-<label>_<surface>.surf.gii
These are useful for plotting CIFTI results on subject anatomy.
* FIX: Stop excluding FS minc_modify_header used during fallback registration (#453)
* ENH: Output fsLR meshes on subject surfaces (#460)
* ENH: Support spatial normalization to alternative modalities (#459)
* ENH: Add `t2w_file` output to `TemplateFlowSelect` (#457)
* MNT: Enable pre-release tests (#461)
* MNT: Complete transition from flake8/black to ruff (#435)
* MNT: Adopt src/ layout and tox (#458)
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Builds off #457
Requires nipreps/niworkflows#911
Adds a new parameter to
init_register_template_wf(),image_type, to allow setting alternative registration targets for spatial normalization.Also adds a tweak to the antsRegistration call to disable histogram_matching (which is enabled in most of the preset settings used), for cases where the reference anatomical and template target differ in modality.