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RF: Simplify MGHImage and add footer fields #569

Merged
merged 34 commits into from
Dec 18, 2017
Merged

RF: Simplify MGHImage and add footer fields #569

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bb56000
FIX/ENH: get/set_data_shape more robustly
effigies Oct 25, 2017
d7b472a
RF: Subclass MGHHeader from LabeledWrapStruct
effigies Oct 25, 2017
415ee10
RF: Remove one-line private method
effigies Oct 25, 2017
4e520ac
FIX: goodRASFlag check, update
effigies Oct 25, 2017
a83f80b
RF: Remove unused _load_cache
effigies Oct 25, 2017
ae5c085
FIX: Label x/y/z_ras correctly
effigies Oct 25, 2017
6b6e512
RF: Make direction cosines explicit, not transposed
effigies Oct 25, 2017
971c98a
RF: Pxyz_c to c_ras
effigies Oct 25, 2017
3823788
RF: Simplify to/from affine
effigies Oct 25, 2017
ef86052
Rename goodRASFlag -> ras_good
effigies Oct 25, 2017
f742d4c
FIX/TEST: MGHImages must be 3D or 4D
effigies Oct 27, 2017
d0b7788
RF: delta -> voxelsize; simplify conversion code
effigies Oct 28, 2017
8c9a141
TEST: Update tests for refactor
effigies Oct 28, 2017
ef831af
DOC: Annotate header fields
effigies Oct 28, 2017
5ce50fd
RF: Improve footer handling
effigies Oct 28, 2017
f3811ba
ENH: Return TR as 4th zoom for 4D images
effigies Oct 28, 2017
76210cd
RF: Reset zooms to 1 on reshape
effigies Oct 28, 2017
ae912c3
TEST: Footer; FIX: Simplify defaults
effigies Oct 28, 2017
024e190
FIX: Python 2 division
effigies Oct 28, 2017
fce43fa
TEST: Missing functionality tests
effigies Oct 30, 2017
98fc992
ENH/DOC: Update and document get/set_zooms
effigies Oct 31, 2017
d193d7b
RF: Simplify affine conversion code
effigies Oct 31, 2017
16c8bb6
ENH: Check for expected byte order
effigies Oct 31, 2017
743db3b
ENH: Re-add _header_data with deprecation warning
effigies Oct 31, 2017
495bbce
FIX: Return on get, not on set
effigies Nov 9, 2017
821b6b6
REVERT renamed/reshaped header fields
effigies Nov 9, 2017
fede660
RF/TEST: Check endianness rather than ignoring
effigies Dec 9, 2017
0d4cdd0
RF: Remove endianness, override copy, as_byteswapped, diagnose_binary…
effigies Dec 9, 2017
93f3c70
FIX: Do not double-set attributes
effigies Dec 9, 2017
664f11c
TEST: TestWrapStruct features, set_zooms, deprecated fields
effigies Dec 9, 2017
3f62445
TEST: Add and test version check
effigies Dec 9, 2017
fa73ad4
TEST: Test MGHHeader._HeaderData fully
effigies Dec 9, 2017
c066cea
STY: Typo
effigies Dec 18, 2017
8d720fe
DOC: Add reference to FreeSurfer wiki
effigies Dec 18, 2017
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