Merge pull request #74 from mgxd/enh/fs-linear-test

ENH: Add FS transform regression

Author: oesteban

.travis.yml

@@ -24,6 +24,7 @@ before_install:
       CI_ENV=`bash <(curl -s https://codecov.io/env)`
       docker pull ${DOCKER_IMAGE}  # pull latest release
       docker run $CI_ENV -itd --name fmriprep --entrypoint=/bin/bash -v `pwd`:/opt/nt -w /opt/nt ${DOCKER_IMAGE}
+      docker exec fmriprep sh -c 'echo "cHJpbnRmICJrcnp5c3p0b2YuZ29yZ29sZXdza2lAZ21haWwuY29tXG41MTcyXG4gKkN2dW12RVYzelRmZ1xuRlM1Si8yYzFhZ2c0RVxuIiA+IC9vcHQvZnJlZXN1cmZlci9saWNlbnNlLnR4dAo=" | base64 -d | sh'
     fi
 
 install:

nitransforms/tests/test_linear.py

@@ -28,6 +28,9 @@
 3dAllineate -base {reference} -input {moving} \
 -prefix resampled.nii.gz -1Dmatrix_apply {transform} -final NN\
 """.format,
+    'fs': """\
+mri_vol2vol --mov {moving} --targ {reference} --lta {transform} \
+--o resampled.nii.gz --nearest --inv""".format,
 }
 
 
@@ -124,7 +127,7 @@ def test_linear_save(tmpdir, data_path, get_testdata, image_orientation, sw_tool
 @pytest.mark.parametrize('image_orientation', [
     'RAS', 'LAS', 'LPS',  # 'oblique',
 ])
-@pytest.mark.parametrize('sw_tool', ['itk', 'fsl', 'afni'])
+@pytest.mark.parametrize('sw_tool', ['itk', 'fsl', 'afni', 'fs'])
 def test_apply_linear_transform(
         tmpdir,
         get_testdata,
@@ -143,6 +146,8 @@ def test_apply_linear_transform(
     ext = ''
     if sw_tool == 'itk':
         ext = '.tfm'
+    elif sw_tool == 'fs':
+        ext = '.lta'
 
     img.to_filename('img.nii.gz')
     xfm_fname = 'M.%s%s' % (sw_tool, ext)