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MAINT: Update CircleCI's infrastructure (machine image and Python version in Docker image) #206

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merged 5 commits into from
May 17, 2024
Merged

MAINT: Update CircleCI's infrastructure (machine image and Python version in Docker image) #206

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bcb4220
fix: update circleci machine image
oesteban May 16, 2024
7cef99c
fix: update python version in dockerfile
oesteban May 16, 2024
4f59910
fix: clean up environment cache
oesteban May 16, 2024
315aab9
fix: select python without fiddling
oesteban May 17, 2024
c6b63b2
fix: path to wheel
oesteban May 17, 2024
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53 changes: 22 additions & 31 deletions .circleci/config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ version: 2
jobs:
build_pytest:
machine:
image: ubuntu-2004:202107-02
image: default
working_directory: /tmp/src/nitransforms
environment:
TZ: "/usr/share/zoneinfo/America/Los_Angeles"
Expand All @@ -12,9 +12,9 @@ jobs:
- checkout
- restore_cache:
keys:
- env-v3-{{ .Branch }}-
- env-v3-master-
- env-v3-
- env-v6-{{ .Branch }}-
- env-v6-master-
- env-v6-
- run:
name: Setup git-annex
command: |
Expand All @@ -29,17 +29,14 @@ jobs:
- run:
name: Setup DataLad
command: |
export PY3=$(pyenv versions | grep '3\.' |
sed -e 's/.* 3\./3./' -e 's/ .*//')
pyenv local $PY3
python -m pip install --no-cache-dir -U pip "setuptools >= 45.0" "setuptools_scm[toml] >= 3.4"
python -m pip install --no-cache-dir -U datalad datalad-osf
python3 -m pip install --no-cache-dir -U pip "setuptools >= 45.0" "setuptools_scm[toml] >= 6.2"
python3 -m pip install --no-cache-dir -U datalad datalad-osf

- save_cache:
key: env-v3-{{ .Branch }}-{{ .BuildNum }}
key: env-v6-{{ .Branch }}-{{ .BuildNum }}
paths:
- /opt/circleci/git-annex.linux
- /opt/circleci/.pyenv/versions/3.9.4
- /opt/circleci/.pyenv/versions

- restore_cache:
keys:
Expand All @@ -49,10 +46,9 @@ jobs:
- run:
name: Install test data from GIN
command: |
export PY3=$(pyenv versions | grep '3\.' |
sed -e 's/.* 3\./3./' -e 's/ .*//')
pyenv local $PY3
export PATH=/opt/circleci/git-annex.linux:$PATH
pyenv local 3
eval "$(pyenv init --path)"
mkdir -p /tmp/data
cd /tmp/data
datalad install -r https://gin.g-node.org/oesteban/nitransforms-tests
Expand Down Expand Up @@ -98,15 +94,12 @@ jobs:
name: Build Docker image & push to registry
no_output_timeout: 60m
command: |
export PY3=$(pyenv versions | grep '3\.' |
sed -e 's/.* 3\./3./' -e 's/ .*//')
pyenv local $PY3
e=1 && for i in {1..5}; do
docker build --rm --cache-from=nitransforms:latest \
-t nitransforms:latest \
--build-arg BUILD_DATE=`date -u +"%Y-%m-%dT%H:%M:%SZ"` \
--build-arg VCS_REF=`git rev-parse --short HEAD` \
--build-arg VERSION=$( python3 setup.py --version ) . \
--build-arg VERSION=$( python3 -m setuptools_scm ) . \
&& e=0 && break || sleep 15
done && [ "$e" -eq "0" ]
docker tag nitransforms:latest localhost:5000/nitransforms
Expand All @@ -123,10 +116,7 @@ jobs:
- run:
name: Check version packaged in Docker image
command: |
export PY3=$(pyenv versions | grep '3\.' |
sed -e 's/.* 3\./3./' -e 's/ .*//')
pyenv local $PY3
THISVERSION=${CIRCLE_TAG:-$(python3 setup.py --version)}
THISVERSION=${CIRCLE_TAG:-$(python3 -m setuptools_scm)}
INSTALLED_VERSION=$(\
docker run -it --rm --entrypoint=python nitransforms \
-c 'import nitransforms as nit; print(nit.__version__, end="")' )
Expand All @@ -141,13 +131,14 @@ jobs:
echo "cHJpbnRmICJrcnp5c3p0b2YuZ29yZ29sZXdza2lAZ21haWwuY29tXG41MTcyXG4gKkN2dW12RVYzelRmZ1xuRlM1Si8yYzFhZ2c0RVxuIiA+IGxpY2Vuc2UudHh0Cg==" | base64 -d | sh
- run:
name: Get codecov
command: python -m pip install codecov
command: python3 -m pip install codecov
- run:
name: Run unit tests
no_output_timeout: 2h
command: |
mkdir -p /tmp/tests/{artifacts,summaries}
docker run -u $( id -u ) -it --rm -w /src/nitransforms \
docker run -u $( id -u ) -it --rm \
-w /src/nitransforms -v $PWD:/src/nitransforms \
-v /tmp/data/nitransforms-tests:/data -e TEST_DATA_HOME=/data \
-e COVERAGE_FILE=/tmp/summaries/.pytest.coverage \
-v /tmp/fslicense/license.txt:/opt/freesurfer/license.txt:ro \
Expand All @@ -159,7 +150,7 @@ jobs:
name: Submit unit test coverage
command: |
cd /tmp/src/nitransforms
python -m codecov --file /tmp/tests/summaries/unittests.xml \
python3 -m codecov --file /tmp/tests/summaries/unittests.xml \
--flags unittests -e CIRCLE_JOB
- run:
name: Clean up tests directory
Expand All @@ -186,9 +177,9 @@ jobs:
command: |
python3 -m venv /tmp/buildenv
source /tmp/buildenv/bin/activate
python3 -m pip install "setuptools >= 45.0" wheel "setuptools_scm[toml] >= 3.4" \
python3 -m pip install "setuptools >= 45.0" build wheel "setuptools_scm[toml] >= 6.2" \
"pip>=10.0.1" twine docutils
python setup.py sdist bdist_wheel
python3 -m build
twine check dist/nitransforms*
- store_artifacts:
path: /tmp/src/nitransforms/dist
Expand All @@ -200,9 +191,9 @@ jobs:
command: |
python3 -m venv /tmp/install_sdist
source /tmp/install_sdist/bin/activate
python3 -m pip install "setuptools >= 45.0" "pip>=10.0.1"
python3 -m pip install "setuptools >= 45.0" "pip>=10.0.1" "setuptools_scm[toml] >= 6.2"

THISVERSION=$( python3 setup.py --version )
THISVERSION=$( python3 -m setuptools_scm )
THISVERSION=${CIRCLE_TAG:-$THISVERSION}
python3 -m pip install dist/nitransforms*.tar.gz
INSTALLED_VERSION=$(python3 -c 'import nitransforms as nit; print(nit.__version__, end="")')
Expand All @@ -214,9 +205,9 @@ jobs:
command: |
python3 -m venv /tmp/install_wheel
source /tmp/install_wheel/bin/activate
python3 -m pip install "setuptools >= 45.0" "pip>=10.0.1"
python3 -m pip install "setuptools >= 45.0" "pip>=10.0.1" "setuptools_scm[toml] >= 6.2"

THISVERSION=$( python3 setup.py --version )
THISVERSION=$( python3 -m setuptools_scm )
THISVERSION=${CIRCLE_TAG:-$THISVERSION}
python3 -m pip install dist/nitransforms*.whl
INSTALLED_VERSION=$(python3 -c 'import nitransforms as nit; print(nit.__version__, end="")')
Expand Down
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