Googling the cancer genome

All

10 repositories

sv-callers
Public
Snakemake-based workflow for detecting structural variants in genomic data
snakemake somatic-variants cancer-genomics wgs hpc-applications germline-variants structural-variants sv-calling workflow bioinformatics
Python
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Apache License 2.0
•35•80•7•0•Updated Feb 14, 2025Feb 14, 2025
sv-gen
Public
Snakemake-based workflow for generating artificial genomes with structural variants
bioinformatics simulator cancer-genomics wgs hpc-applications structural-variants workflow snakemake
Python
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Apache License 2.0
•1•7•1•0•Updated Feb 14, 2025Feb 14, 2025
docker-images
Public
Docker images for CI testing
Dockerfile
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Apache License 2.0
•0•0•0•0•Updated Feb 29, 2024Feb 29, 2024
sv-channels
Public
Deep learning-based structural variant filtering method
Python
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Apache License 2.0
•6•38•21•2•Updated Nov 19, 2023Nov 19, 2023
notebooks
Public
This repo mirrors the Jupyter Notebooks archived at Zenodo
Jupyter Notebook
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Apache License 2.0
•0•1•1•0•Updated Aug 26, 2020Aug 26, 2020
breakpoint-pairs
Public
Minor research internship of Sarah Mehrem.
Python
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Apache License 2.0
•0•0•0•0•Updated Oct 24, 2019Oct 24, 2019
bamsurgeon
Public
tools for adding mutations to existing .bam files, used for testing mutation callers
Python
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MIT License
•86•0•0•0•Updated Feb 27, 2019Feb 27, 2019
sv-report
Public
Apache License 2.0
•0•0•0•0•Updated Jan 26, 2018Jan 26, 2018
hsv-ld
Public
Linked Data Platform for Structural Variants in Human Cancer Genomes
Shell
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Apache License 2.0
•2•0•0•0•Updated Dec 1, 2017Dec 1, 2017
ga-integr8
Public
Genome Annotation Data Integration
Python
•0•0•2•0•Updated Nov 29, 2017Nov 29, 2017