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Achievements

Achievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Shark

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  • hapax-instrument-definitions Public

    My instrument definition files for the Squarp Hapax sequencer

    Updated Nov 10, 2024

  • latex-nihbiosketch Public

    A LaTeX class implementing the new NIH Biographical Sketch Format

    TeX 46 32 Other Updated Aug 8, 2024

  • spotz Public

    A library for quantifying microbial colony growth using time series imaging

    Jupyter Notebook 1 Updated Aug 5, 2024

  • bio-data-analysis Public

    Draft notes for a grad course in biological data analysis and best practices

    1 Updated Jul 11, 2023

  • bio208live Public

    Updated Oct 27, 2022

  • a-test-mkdoc-site Public

    Checking this out!

    Creative Commons Zero v1.0 Universal Updated Oct 22, 2022

  • tutorial_r_introduction Public

    Forked from karoliskoncevicius/r_notes
    Updated Feb 6, 2022

  • seqkit-issues Public

    Updated Feb 1, 2022

  • vscode-memo Public

    Forked from svsool/memo

    Markdown knowledge base with bidirectional [[link]]s built on top of VSCode

    TypeScript MIT License Updated Jan 28, 2022

  • pseudotime-2003 Public

    Code associated with Magwene et al. 2003, Bioinformatics 19(7):842-850.

    Python Updated May 3, 2021

  • biofiles Public

    Go library for dealing with common bioinformatics file types.

    Go 2 GNU General Public License v3.0 Updated Jan 9, 2020

  • Nim Public

    Forked from nim-lang/Nim

    Nim is a compiled, garbage-collected systems programming language with a design that focuses on efficiency, expressiveness, and elegance (in that order of priority).

    Nim 1 Other Updated Nov 5, 2019

  • notesdotpy Public

    A simple command line note taking script written in Python.

    Python 5 1 Updated Oct 16, 2019

  • Data-PLoS-Comp-Bio-2011 Public

    Read count data for Magwene et al. 2011, PLoS Comp Bio

    1 Updated Aug 12, 2019

  • unscanny Public

    A Python tool for time series imaging using flatbed scanners

    Python 1 GNU General Public License v3.0 Updated Dec 3, 2018

  • Gooey Public

    Forked from chriskiehl/Gooey

    Turn (almost) any Python command line program into a full GUI application with one line

    Python 1 1 MIT License Updated Feb 6, 2018

  • ukulele Public

    Ukelele related items

    1 Updated Jan 19, 2018

  • imgz Public

    Python routines for working with image data, based on scikit-image, scipy, etc.

    Python 1 GNU General Public License v3.0 Updated Jul 20, 2017

  • matplotlib Public

    Forked from matplotlib/matplotlib

    matplotlib: plotting with Python

    Python 1 Updated Jul 7, 2017

  • Bio723 Public

    Course repository for Bio 723

    HTML 6 4 Updated Jul 2, 2017

  • bug-reports Public

    repository for uploading stuff related to bug reports I file

    1 Updated Jun 21, 2017

  • emacs-musings Public

    1 Updated Jun 16, 2017

  • silkworm-derived-theme Public

    Forked from mswift42/silkworm-theme

    Light Emacs theme with low contrast colors.

    Emacs Lisp 1 GNU General Public License v3.0 Updated Jun 8, 2017

  • anti-zenburn-theme Public

    Forked from m00natic/anti-zenburn-theme

    Low contrast grayish Emacs theme, Zenburn palette complemented.

    Emacs Lisp 1 Updated Jul 25, 2016

  • cluster-kleiweg Public

    Clustering utilities from Peter Kleiweg's website -- see http://www.let.rug.nl/~kleiweg/clustering/

    C 1 GNU General Public License v2.0 Updated May 11, 2016

  • cheatsheets Public

    Cheat sheets (reference cards) for various programs

    TeX 1 1 Creative Commons Zero v1.0 Universal Updated Apr 3, 2016

  • microbial-growth-models Public

    Jupyter Notebook 1 Updated Feb 27, 2016

  • ipython-notebooks Public

    Paul's public ipython notebooks

    Jupyter Notebook 1 Updated Jan 13, 2016

  • latex-templates Public

    LaTeX templates for various types of documents

    TeX 6 3 Updated May 6, 2015

  • Duke-BioHaskell-Group Public

    A repository for the Duke BioHaskell Interest Group

    5 Updated Apr 2, 2015