package polymake 3.0 #20892

videlec · 2016-06-27T15:40:59Z

Package now compiles out of the box! There will be a next ticket for its interface within Sage.

upstream tarball: https://polymake.org/lib/exe/fetch.php/download/polymake-3.0r2-minimal.tar.bz2

Once installed you should be able to run polymake with

$ sage -sh -c polymake
Welcome to polymake version 3.0
Copyright (c) 1997-2015
...
polytope >

previous attempts (with earlier versions): #13768, #14116

upstream discussion at:

Follow-up tickets:

Upgrade bliss package to 0.73 with Debian patches; install header files in location expected by polymake #20901: Upgrade bliss package to 0.73 with Debian patches; install header files in location expected by polymake
Add Sage packages for additional software used by Polymake #20977: Add Sage packages for additional software used by Polymake
Polymake extensions #20907: Polymake extensions
package pypolymake #21170: pypolymake

Depends on #20894
Depends on #20886
Depends on #20901

CC: @dimpase @mkoeppe @fchapoton @stumpc5 @mo271 @tscrim

Component: packages: experimental

Author: Vincent Delecroix, Matthias Koeppe

Branch: 7b096fd

Reviewer: Matthias Koeppe, Vincent Delecroix, Karl-Dieter Crisman

Issue created by migration from https://trac.sagemath.org/ticket/20892

The text was updated successfully, but these errors were encountered:

videlec · 2016-06-27T15:42:38Z

Branch: u/vdelecroix/20892

videlec · 2016-06-27T15:42:38Z

Commit: 9253643

videlec · 2016-06-27T15:42:38Z

New commits:

`9253643`	`Trac 20892: package for polymake 3.0`

sagetrac-git · 2016-06-27T16:35:47Z

Changed commit from 9253643 to cf20c0b

sagetrac-git · 2016-06-27T16:35:47Z

Branch pushed to git repo; I updated commit sha1. New commits:

`cf20c0b`	`trac 20892: more options to ./configure`

mkoeppe · 2016-06-27T16:49:06Z

comment:6

Installation fails on Mac OS X:

[polymake-3.0r1] Found local metadata for polymake-3.0r1
[polymake-3.0r1] Using cached file /Users/mkoeppe/cvs/sage/upstream/polymake-3.0r1.tar.bz2
[polymake-3.0r1] polymake-3.0r1
[polymake-3.0r1] ====================================================
[polymake-3.0r1] Setting up build directory for polymake-3.0r1
[polymake-3.0r1] Finished extraction
[polymake-3.0r1] ****************************************************
[polymake-3.0r1] Host system:
[polymake-3.0r1] Darwin egret.local 15.5.0 Darwin Kernel Version 15.5.0: Tue Apr 19 18:36:36 PDT 2016; root:xnu-3248.50.21~8/RELEASE_X86_64 x86_64
[polymake-3.0r1] ****************************************************
[polymake-3.0r1] C compiler: gcc
[polymake-3.0r1] C compiler version:
[polymake-3.0r1] Using built-in specs.
[polymake-3.0r1] COLLECT_GCC=/Users/mkoeppe/cvs/sage/local/bin/gcc
[polymake-3.0r1] COLLECT_LTO_WRAPPER=/Users/mkoeppe/cvs/sage/local/libexec/gcc/x86_64-apple-darwin15.2.0/4.9.2/lto-wrapper
[polymake-3.0r1] Target: x86_64-apple-darwin15.2.0
[polymake-3.0r1] Configured with: ../src/configure --prefix=/Users/mkoeppe/cvs/sage/local --with-local-prefix=/Users/mkoeppe/cvs/sage/local --with-gmp=/Users/mkoeppe/cvs/sage/local --with-mpfr=/Users/mkoeppe/cvs/sage/local --with-mpc=/Users/mkoeppe/cvs/sage/local --with-system-zlib --disable-multilib --disable-nls --enable-languages=c,c++,fortran --disable-libitm --with-build-config=bootstrap-debug --without-isl --without-cloog  
[polymake-3.0r1] Thread model: posix
[polymake-3.0r1] gcc version 4.9.2 (GCC) 
[polymake-3.0r1] ****************************************************
[polymake-3.0r1] checking C++ compiler ... ok (g++ is GCC 4.9.2)
[polymake-3.0r1] checking C++ library ... ok (GNU stdlibc++ 20141030, C++ 199711)
[polymake-3.0r1] checking fink installation ... ok (/sw)
[polymake-3.0r1] checking fink gmp installation ... ok
[polymake-3.0r1] checking fink mpfr installation ... ok
[polymake-3.0r1] determining compiler flags ... ok
[polymake-3.0r1]    CFLAGS= -Wall ${ARCHFLAGS}
[polymake-3.0r1]    CXXFLAGS= -ftemplate-depth-200 -Wall -Wno-strict-aliasing -Wno-parentheses -fwrapv -fopenmp ${ARCHFLAGS}
[polymake-3.0r1] checking gmp installation ... ok (/sw)
[polymake-3.0r1] checking mpfr installation ... ok
[polymake-3.0r1] checking shared perl library ... failed
[polymake-3.0r1] 
[polymake-3.0r1] Could not compile a test program for the libperl.bundle shared library.
[polymake-3.0r1] The build error is as follows:
[polymake-3.0r1] /var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gn/T//polymake_54759_configure.cc: In function 'int main(int, char**, char**)':
[polymake-3.0r1] /var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gn/T//polymake_54759_configure.cc:8:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
[polymake-3.0r1]     char *embedding[] = { "", "-e", "0" };
[polymake-3.0r1]                                         ^
[polymake-3.0r1] /var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gn/T//polymake_54759_configure.cc:8:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
[polymake-3.0r1] /var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gn/T//polymake_54759_configure.cc:8:40: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
[polymake-3.0r1] <stdin>:18:8: error: register %rbp is only available in 64-bit mode
[polymake-3.0r1]         pushq   %rbp
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:20:7: error: register %rsp is only available in 64-bit mode
[polymake-3.0r1]         movq    %rsp, %rbp
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:22:12: error: register %rsp is only available in 64-bit mode
[polymake-3.0r1]         subq    $64, %rsp
[polymake-3.0r1]                      ^~~~
[polymake-3.0r1] <stdin>:23:17: error: register %rbp is only available in 64-bit mode
[polymake-3.0r1]         movl    %edi, -36(%rbp)
[polymake-3.0r1]                           ^~~~
[polymake-3.0r1] <stdin>:24:7: error: register %rsi is only available in 64-bit mode
[polymake-3.0r1]         movq    %rsi, -48(%rbp)
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:25:7: error: register %rdx is only available in 64-bit mode
[polymake-3.0r1]         movq    %rdx, -56(%rbp)
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:28:11: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         leaq    LC0(%rip), %rax
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:29:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, -32(%rbp)
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:30:11: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         leaq    LC1(%rip), %rax
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:31:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, -24(%rbp)
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:32:11: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         leaq    LC2(%rip), %rax
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:33:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, -16(%rbp)
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:35:11: error: register %rbp is only available in 64-bit mode
[polymake-3.0r1]         leaq    -56(%rbp), %rdx
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:36:11: error: register %rbp is only available in 64-bit mode
[polymake-3.0r1]         leaq    -48(%rbp), %rcx
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:37:11: error: register %rbp is only available in 64-bit mode
[polymake-3.0r1]         leaq    -36(%rbp), %rax
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:38:7: error: register %rcx is only available in 64-bit mode
[polymake-3.0r1]         movq    %rcx, %rsi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:39:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, %rdi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:43:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, __ZL7my_perl(%rip)
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:45:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rax
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:46:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, %rdi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:49:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rax
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:50:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rdx
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:51:14: error: register %rdx is only available in 64-bit mode
[polymake-3.0r1]         movzbl  1150(%rdx), %edx
[polymake-3.0r1]                      ^~~~
[polymake-3.0r1] <stdin>:53:17: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movb    %dl, 1150(%rax)
[polymake-3.0r1]                           ^~~~
[polymake-3.0r1] <stdin>:55:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rax
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:56:11: error: register %rbp is only available in 64-bit mode
[polymake-3.0r1]         leaq    -32(%rbp), %rdx
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:57:11: error: register %r8d is only available in 64-bit mode
[polymake-3.0r1]         movl    $0, %r8d
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:58:7: error: register %rdx is only available in 64-bit mode
[polymake-3.0r1]         movq    %rdx, %rcx
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:61:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, %rdi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:64:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rax
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:65:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, %rdi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:68:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rax
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:70:11: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         leaq    LC3(%rip), %rsi
[polymake-3.0r1]                     ^~~~
[polymake-3.0r1] <stdin>:71:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, %rdi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:74:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rax
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:75:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, %rdi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] <stdin>:78:20: error: register %rip is only available in 64-bit mode
[polymake-3.0r1]         movq    __ZL7my_perl(%rip), %rax
[polymake-3.0r1]                              ^~~~
[polymake-3.0r1] <stdin>:79:7: error: register %rax is only available in 64-bit mode
[polymake-3.0r1]         movq    %rax, %rdi
[polymake-3.0r1]                 ^~~~
[polymake-3.0r1] 
[polymake-3.0r1] 
[polymake-3.0r1] On some systems the library is contained in a separate package named like
[polymake-3.0r1] perl-devel or libperl-dev.  Please look for such a package and install it.
[polymake-3.0r1] 
[polymake-3.0r1] As a last resort, you can configure polymake with the option --without-callable .
[polymake-3.0r1] You won't be able to build the callable library any more, but at least you get
[polymake-3.0r1] polymake compiled.
[polymake-3.0r1] Several configurations for MacOS platform found;
[polymake-3.0r1] Please specify the desired one using the option Arch=<NAME>.
[polymake-3.0r1] Makefile:32: *** CONFIGURATION ERROR.  Stop.
[polymake-3.0r1] 
[polymake-3.0r1] real	0m1.446s
[polymake-3.0r1] user	0m0.940s
[polymake-3.0r1] sys	0m0.350s
[polymake-3.0r1] ************************************************************************
[polymake-3.0r1] Error installing package polymake-3.0r1
[polymake-3.0r1] ************************************************************************
[polymake-3.0r1] Please email sage-devel (http://groups.google.com/group/sage-devel)
[polymake-3.0r1] explaining the problem and including the relevant part of the log file
[polymake-3.0r1]   /Users/mkoeppe/cvs/sage/logs/pkgs/polymake-3.0r1.log
[polymake-3.0r1] Describe your computer, operating system, etc.
[polymake-3.0r1] If you want to try to fix the problem yourself, *don't* just cd to
[polymake-3.0r1] /Users/mkoeppe/cvs/sage/local/var/tmp/sage/build/polymake-3.0r1 and type 'make' or whatever is appropriate.
[polymake-3.0r1] Instead, the following commands setup all environment variables
[polymake-3.0r1] correctly and load a subshell for you to debug the error:
[polymake-3.0r1]   (cd '/Users/mkoeppe/cvs/sage/local/var/tmp/sage/build/polymake-3.0r1' && '/Users/mkoeppe/cvs/sage/sage' --sh)
[polymake-3.0r1] When you are done debugging, you can type "exit" to leave the subshell.
[polymake-3.0r1] ************************************************************************
make[1]: *** [/Users/mkoeppe/cvs/sage/local/var/lib/sage/installed/polymake-3.0r1] Error 1

mkoeppe · 2016-06-27T16:55:02Z

comment:7

It finds my Fink installation (though I removed it from PATH for building Sage) -- should this be disabled?
It does not find Perl -- should I install it in Fink or should we have a Perl package in Sage as a prerequisite?

dimpase · 2016-06-27T16:55:42Z

comment:8

this might be a mismatch between the code emitted by quite new gcc and old assembler, which is unable to compile this into binary. There were a number of such OSX-only reports recently, check the sage-develop...

dimpase · 2016-06-27T16:57:16Z

comment:9

yeah, try to move Fink totally to some /opt/blah place and try again...

mkoeppe · 2016-06-27T17:10:16Z

comment:10

OK. After hiding Fink, I get:

[polymake-3.0r1] checking fink installation ... The Fink package system is a mandatory prerequisite to build and use polymake under MacOS.
[polymake-3.0r1] Please refer to http://www.polymake.org/doku.php/mac for details and installation instructions.
[polymake-3.0r1] If you already have Fink installed at a non-standard location, please specify it using option --with-fink

I'll start again with a fresh install of Fink and install some perl there.

mkoeppe · 2016-06-27T18:09:49Z

comment:11

I will first try to install polymake from source outside of Sage -- this already fails on my machine; I have asked in the Polymake forum for help.

Vincent: I think the right package to use in Sage would be the "minimal" package which picks up cdd, lrs, nauty from the Sage distribution.

sagetrac-git · 2016-06-27T21:36:32Z

Branch pushed to git repo; I updated commit sha1. New commits:

`7130996`	`Trac 20892: use the minimal tarball`

sagetrac-git · 2016-06-27T21:36:32Z

Changed commit from cf20c0b to 7130996

videlec · 2016-06-27T21:37:21Z

comment:13

Replying to @mkoeppe:

Vincent: I think the right package to use in Sage would be the "minimal" package which picks up cdd, lrs, nauty from the Sage distribution.

right. done.

sagetrac-git · 2016-06-27T21:42:41Z

Changed commit from 7130996 to c4b2b0e

sagetrac-git · 2016-06-27T21:42:41Z

Branch pushed to git repo; I updated commit sha1. New commits:

`c4b2b0e`	`Trac 20892: replace tabs with spaces`

mkoeppe · 2016-06-27T22:20:11Z

comment:16

See #20894 for a first step towards an OS X build

mkoeppe · 2016-06-28T01:03:38Z

comment:17

I solved the problem on Mac OS X with the following patch for Polymake, which gets rid of various "-arch" options. The "-arch" options caused the above errors "register %rbp is only available in 64-bit mode" etc.

--- /Users/mkoeppe/s/polymake-3.0/support/configure.pl	2016-01-25 05:34:27.000000000 -0800
+++ src/support/configure.pl	2016-06-27 16:13:24.000000000 -0700
@@ -503,7 +503,7 @@
       }
       print "ok\n";
       if ( $NeedsArchFlag ) {
-         $ARCHFLAGS="-arch $Platform";
+         $ARCHFLAGS="";
       } else {
          $ARCHFLAGS="";
       }
@@ -525,7 +525,7 @@
          }
       }
       if ( $NeedsArchFlag ) {
-         $ARCHFLAGS="-arch $Platform";
+         $ARCHFLAGS="";
       } else {
          $ARCHFLAGS="";
       }
@@ -738,7 +738,14 @@
       # We also build a test program for libperl since e.g. on Debian based systems the
       # check for Config::Config{libperl} will not detect a missing libperl-dev package
       chomp(my $perlldflags = `$PERL -MExtUtils::Embed -e ldopts`);
-      my $build_error=build_test_program(<<'---', CXXflags => `$PERL -MExtUtils::Embed -e ccopts`, LDflags => "$ARCHFLAGS $perlldflags" );
+
+      my $allarch=qr/ -arch \s+ \S+ (?: \s+ -arch \s+ \S+)* /x;
+      $CXXflags =  `$PERL -MExtUtils::Embed -e ccopts` ;
+      $CXXflags =~ s/$allarch//o;
+      $LDflags = $perlldflags;
+      $LDflags =~ s/$allarch//o;
+
+      my $build_error=build_test_program(<<'---', CXXflags => $CXXflags , LDflags => $LDflags );
 #include <EXTERN.h>
 #include <perl.h>

And here is a quick change to spkg-install.

diff --git a/build/pkgs/polymake/spkg-install b/build/pkgs/polymake/spkg-install
index f8e6145..2198466 100755
--- a/build/pkgs/polymake/spkg-install
+++ b/build/pkgs/polymake/spkg-install
@@ -7,6 +7,7 @@ cd src
             --exec-prefix="$SAGE_LOCAL" \
             --includedir="$SAGE_LOCAL"/include \
             --bindir="$SAGE_LOCAL"/bin \
-            --libdir="$SAGE_LOCAL"/lib
+            --libdir="$SAGE_LOCAL"/lib \
+	    --without-fink
 make
 make install

With these changes, Polymake built successfully.

kcrisman · 2016-06-28T03:52:32Z

comment:18

Can you make a package with this? I tried to test it by creating the right patch directory and changing the spkg-install for applying patches but I tend to always make a mess of that. Anyway, having done that, it did get quite a bit further (including #20894) though I did get some warnings e.g.

[polymake-3.0r1] bundled extension group ... disabled because of unsatisfied prerequisite: lrs

But anyway it is making vastly more progress than before, so please bundle this up and with any luck I can help give positive review (I'm assuming it will take a little longer than I want to stay up now to finish!). Great, great work.

mkoeppe · 2016-06-28T04:03:15Z

comment:19

#20692 could help with automating the patching.

mkoeppe · 2016-06-28T04:11:25Z

comment:20

Replying to @kcrisman:

I did get some warnings e.g.

[polymake-3.0r1] bundled extension group ... disabled because of unsatisfied prerequisite: lrs

Yes, I also get a few of those, but the polymake install goes through after that. Details of the 'bundled extensions' can be found in the package build directory ($SAGE_LOCAL/var/tmp/sage/build/polymake-3.0r1/src/build.darwin.x86_64/bundled.log):

Configuration of the following bundled extensions failed, proceeding without them.
If you really need them, please carefully read the following explanations,
take the suggested actions, and repeat the configuration.

---- bliss ----

Could not compile a test program checking for bliss library.
The most probable reasons are that the library is installed at a non-standard location,
is not configured to build a shared module, or missing at all.
The complete error log follows:

/var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gn/T//polymake_25377_configure.cc:1:26: fatal error: bliss/graph.hh: No such file or directory
 #include "bliss/graph.hh"
                          ^
compilation terminated.

Please install the library and specify its location using --with-bliss option, if needed.
Please remember to enable shared modules when configuring the bliss library!

If you are running a Debian system and now see some missing GMP functions in the error message,
then you've got an old broken bliss package;  please upgrade it to the latest version.

I don't know what bliss is but I tried to install it -- but it gave me an error. Reported on #20871.

---- lrs ----

Could not compile a test program checking for lrs library.
The most probable reasons are that the library is installed at a non-standard location,
is not configured to build a shared module, or missing at all.
The complete error log follows:

Undefined symbols for architecture x86_64:
  "_lrs_ifp", referenced from:
      _readrat in liblrsgmp.a(lrsgmp-GMP.o)
      _readmp in liblrsgmp.a(lrsgmp-GMP.o)
      _lrs_mp_init in liblrsgmp.a(lrsgmp-GMP.o)
  "_lrs_ofp", referenced from:
      _readrat in liblrsgmp.a(lrsgmp-GMP.o)
      _pmp in liblrsgmp.a(lrsgmp-GMP.o)
      _prat in liblrsgmp.a(lrsgmp-GMP.o)
      _readmp in liblrsgmp.a(lrsgmp-GMP.o)
      _lrs_mp_init in liblrsgmp.a(lrsgmp-GMP.o)
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status

Please install the library and specify its location using --with-lrs option, if needed.
Please remember to enable shared modules when configuring the lrs library!

I do have lrslib installed. This needs investigating.

---- singular ----

Could not find 'libsingular-config' in path at bundled/singular/configure.pl line 36.

I think singular is standard, but there seems to be no libsingular-config.

---- soplex ----

Could not compile a test program checking for SoPlex.
Please make sure SoPlex was compiled with 'GMP=true' and 'SHARED=true'
and specify its location using --with-soplex=PATH.
The complete error log follows:

/var/folders/38/wnh4gf1552g_crsjnv2vmmww0000gn/T//polymake_25377_configure.cc:3:20: fatal error: soplex.h: No such file or directory
 #include "soplex.h"
                    ^
compilation terminated.

OK, yes, we don't have SoPlex. This is part of the SCIP Optimization Suite. (#10879)

sagetrac-git · 2016-08-05T08:18:16Z

Branch pushed to git repo; I updated commit sha1. New commits:

`f29c486`	`polymake: Add info on prereqs and debugging`
`0781fdc`	`polymake: Set ARCHFLAGS instead of using our broken patch`

sagetrac-git · 2016-08-05T08:18:16Z

Changed commit from 3310092 to 0781fdc

sagetrac-git · 2016-08-05T08:21:42Z

Changed commit from 0781fdc to 0cfedca

sagetrac-git · 2016-08-05T08:21:42Z

Branch pushed to git repo; I updated commit sha1. New commits:

`0cfedca`	`Fixup`

sagetrac-git · 2016-08-05T14:45:36Z

Changed commit from 0cfedca to de0cc74

sagetrac-git · 2016-08-05T14:45:36Z

Branch pushed to git repo; I updated commit sha1. New commits:

`de0cc74`	`polymake: Add bliss as a dependency`

sagetrac-git · 2016-08-05T14:59:52Z

Changed commit from de0cc74 to 7b096fd

sagetrac-git · 2016-08-05T14:59:52Z

Branch pushed to git repo; I updated commit sha1. New commits:

`8798d7d`	`Merge tag '7.3' into t/20892/20892`
`3837a48`	`bliss: Use autotoolized package from Debian`
`225755e`	`bliss: Add more info in SPKG.txt`
`4b22211`	`bliss: Use upstream tarball and patches`
`3111091`	`Merge tag '7.3.beta9' into t/20901/upgrade_bliss_package_to_0_73_with_debian_patches__install_header_files_in_location_expected_by_polymake`
`1c398a3`	`Merge tag '7.3.rc0' into t/20901/upgrade_bliss_package_to_0_73_with_debian_patches__install_header_files_in_location_expected_by_polymake`
`1d2707c`	`Use repackaged archive instead of huge patch`
`c0c0427`	`Adjust to changed bliss header file locations`
`7b096fd`	`Merge branch 't/20901/upgrade_bliss_package_to_0_73_with_debian_patches__install_header_files_in_location_expected_by_polymake' into t/20892/20892`

mkoeppe · 2016-08-05T15:43:28Z

comment:94

Branch has now merged the bliss ticket (#20901).

mkoeppe · 2016-08-05T15:44:13Z

comment:95

#21175 (Set ARCHFLAGS environment variable - for Perl modules) would make polymake's spkg-install simpler.

mkoeppe · 2016-08-05T16:33:41Z

comment:96

Replying to @mkoeppe:

OK, I was able to reproduce this on an Ubuntu box. One of my patches for Mac OS X is to blame. Working on it.

It's now working on Ubuntu (and still on Mac OS X), please test.

videlec · 2016-08-05T17:29:22Z

comment:97

Better. Build without any error and

polytope > show_unconfigured;
vinci.rules
  ...
azove.rules
  ...
splitstree.rules
  ...
latte.rules
  ...
topcom.rules
  ...
porta.rules
  ...
common::property_viewer.rules
common::povray.rules
  ...
common::geomview.rules
  ...
To enable an interface:  reconfigure("RULEFILE");

videlec · 2016-08-05T17:35:18Z

comment:98

However, after switching back to the develop branch doing sage -b gives me

/opt/sage/src/build/cythonized/sage/graphs/bliss.cpp:317:20fatal error: graph.hh: No such file or directory

mkoeppe · 2016-08-05T17:38:14Z

comment:99

Replying to @videlec:

However, after switching back to the develop branch doing sage -b gives me
/opt/sage/src/build/cythonized/sage/graphs/bliss.cpp:317:20fatal error: graph.hh: No such file or directory

Yes, that's normal. Need to keep #20901 in your branch if you have installed the bliss package from #20901.

videlec · 2016-08-12T03:01:06Z

Changed reviewer from Matthias Koeppe, NEEDS MORE REVIEWERS to Matthias Koeppe, Vincent Delecroix

videlec · 2016-08-12T03:01:06Z

comment:101

It works well on top of 7.4.beta0. Setting to positive review in order to be easily available for testing.

kcrisman · 2016-08-12T18:04:38Z

Changed reviewer from Matthias Koeppe, Vincent Delecroix to Matthias Koeppe, Vincent Delacroix, Karl-Dieter Crisman

mkoeppe · 2016-08-12T19:13:15Z

Changed reviewer from Matthias Koeppe, Vincent Delacroix, Karl-Dieter Crisman to Matthias Koeppe, Vincent Delecroix, Karl-Dieter Crisman

vbraun · 2016-08-13T22:50:27Z

Changed branch from u/mkoeppe/20892 to 7b096fd

kcrisman · 2016-08-15T13:18:19Z

Changed commit from 7b096fd to none

kcrisman · 2016-08-15T13:18:19Z

comment:105

For those who really know this stuff, on a related note: http://ask.sagemath.org/question/34457/why-cant-i-compute-the-ehrhart-polynomial-of-a-polytope/?answer=34458#post-id-34458 so hopefully it will be more obvious soon what to do for this type of user.

dimpase · 2017-01-12T12:19:25Z

comment:106

People report that building Singular with polymake (not this one, a systemwide one) installed leads to a problem. This ought to be investigated.

videlec added this to the sage-7.3 milestone Jun 27, 2016

videlec added c: packages: optional labels Jun 27, 2016

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mkoeppe added the s: needs work label Aug 5, 2016

mkoeppe added s: needs review and removed s: needs work labels Aug 5, 2016

videlec added s: positive review and removed s: needs review labels Aug 12, 2016

vbraun removed the s: positive review label Aug 13, 2016

vbraun closed this as completed in 1aebff9 Aug 13, 2016

jhpalmieri mentioned this issue May 10, 2021

Archive superseded/broken old-style packages #19220

Closed

package polymake 3.0 #20892

package polymake 3.0 #20892

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