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ENH: Improved testing of LTA handling - ITK-to-LTA, mri_concatenate_lta #75

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merged 2 commits into from
Mar 20, 2020

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This PR adds more LTA and corresponding ITK conversions. The ITK
conversions have been calculated with lta_convert. The original
NIfTI files have also been added to this PR for the implementation of
future tests.

Files have been named with some sort of BIDS derived nomenclature. Some
provenance has been recorded as initial comments of the LTA files.

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pull-assistant bot commented Mar 20, 2020

Score: 1.00

Best reviewed: commit by commit


Optimal code review plan

     ENH: Beef-up LTA tests with one equivalent to mri_concatenate_lta

     enh: add ITK-to-LTA tests

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codecov-io commented Mar 20, 2020

Codecov Report

Merging #75 into master will increase coverage by 0.2%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff            @@
##           master      #75     +/-   ##
=========================================
+ Coverage   98.68%   98.89%   +0.2%     
=========================================
  Files          11       11             
  Lines         992      992             
  Branches      129      129             
=========================================
+ Hits          979      981      +2     
+ Misses          7        6      -1     
+ Partials        6        5      -1
Flag Coverage Δ
#unittests 98.89% <ø> (+0.2%) ⬆️
Impacted Files Coverage Δ
nitransforms/linear.py 97.4% <0%> (+1.29%) ⬆️

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@oesteban oesteban force-pushed the rf/more-lta-work branch 2 times, most recently from 3a9a132 to 065a1c9 Compare March 20, 2020 07:17
@oesteban oesteban changed the title ENH: Beef-up LTA tests with one equivalent to mri_concatenate_lta ENH: Improved testing of LTA handling - ITK-to-LTA, mri_concatenate_lta Mar 20, 2020
@oesteban oesteban requested a review from mgxd March 20, 2020 15:32
This PR adds more LTA and corresponding ITK conversions. The ITK
conversions have been calculated with ``lta_convert``. The original
NIfTI files have also been added to this PR for the implementation of
future tests.

Files have been named with some sort of BIDS derived nomenclature. Some
provenance has been recorded as initial comments of the LTA files.
@oesteban
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Good to go?

@oesteban oesteban merged commit 439354a into nipy:master Mar 20, 2020
@oesteban oesteban deleted the rf/more-lta-work branch March 20, 2020 17:21
oesteban added a commit to oesteban/nitransforms that referenced this pull request Mar 28, 2020
This PR starts the implementation of "collapsing" series of transforms,
for the linear case.

It is tested on real data added in the context of nipy#66, nipy#74 and nipy#75.
For the moment does not cover unintended use-cases such as collapsing
transform sequences containing one or more nonlinear transforms.

Resolves: nipy#88
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2 participants